BtaINT0097223 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53636411-53637318:-
Coord C1 exon
chr1:53637169-53637318
Coord A exon
chr1:53636582-53637168
Coord C2 exon
chr1:53636411-53636581
Length
587 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TTCTAATCACAACCTTGAAGTAT
3' ss Score
-0.21
Exon sequences
Seq C1 exon
GTGACCTATGCTGTTGGTGCCTTGTCTAAGTCAATCTATGAGAGAATGTTTAAGTGGCTGGTGGCACGTATCAACAGGGTCCTGGATGCCAAGCTGTCAAGACAATTCTTCATTGGCATTCTTGACATCACTGGTTTTGAGATGCTTGAT
Seq A exon
GTAAGTATATCTGGTAAAAGTGAAGTTGATGTATATTTACAAGAGAATTAGACTATGTGAATTGAATGTCAGAAGATGTAGTCAGAGCATGATGAAAATCATTCTGTGCAAACTTAAACAGCTACTTTGGTTGGAAAAAGCTATTATTAATATTAACAAATGACAATAAAAATCATTATAATTAATAGTGCTAAGAAATTAATTCAGCCTTAAATAAAGGTAAATTAAGACATCTTTTATGATTTTGAATTGTAATATCATTAAATGTTAATTTCCTATCATAATCTTAATTTGCAGATATGTATGAAGGAGGTTAAGAATATAATTGAGCAATTTTTACTTATTGGGTTTATTTGCCAACATATGATAGTGGTTGTGGTTTTCTCTTTACATTTTCCAAGTGAACTTCTATTTTATTTTTTTTACTGAAGTATGTTTGACAATTAAAAATATATATTTAAGCAGAACAACTTGATTCAGTGCACATATACATTGTGAAATAATCAATACAATCAAGTTAATTAACATATCCATCACCTCCAATAATTACTATTTTCTCAATTTTATTTCTAATCACAACCTTGAAG
Seq C2 exon
TATAACAGTCTTGAACAACTTTGCATTAATTTTACCAATGAAAAGTTACAACAGTTCTTCAATCAGCATACGTTGGTTTTGGAGCAAGAGGAATATAGGAGAGAAGGCATTGACTGGGTGTCCATCGACTTTGGCCTGGATTTGCAAGCCTGTGTGGATCTTGTTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTATGCTGTTGGTGCC
R:
CTCAACAAGATCCACACAGGCT
Band lengths:
318-905
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development