GgaINT0119183 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90805335-90806221:-
Coord C1 exon
chr1:90806072-90806221
Coord A exon
chr1:90805506-90806071
Coord C2 exon
chr1:90805335-90805505
Length
566 bp
Sequences
Splice sites
5' ss Seq
GATGTGAGT
5' ss Score
7.77
3' ss Seq
TCTCATTTTAACTCCTGCAGTTC
3' ss Score
7.55
Exon sequences
Seq C1 exon
GTTTTGTATGCTGTTGGGGCCTTATCCAAGGCAGTGTATGATCGAATGTTCAAGTGGCTGGTGGTCCGTATCAACAAAACACTGGACACTAAGCTGCCAAGACAGTTCTTCATTGGAGTCCTGGACATTGCTGGCTTTGAAATCTTTGAT
Seq A exon
GTGAGTATTAATGTGTGAGGACTTGGGGAAGGACGTAGAAGTTATGAAGAACCAGCTCTAGGGTGGGCATTTCTTCTAAGTGGACAGGAGTTAAAAAAAAAAAAAAAATGCATGTGACTTCACAAGGCTTTTCCATGAATAGATGTAGACAATACAACATTCAGCACAGCTGCACGTGGTGATAGTTCCTGGGGAAGAAGGGGAAGTCAGCCTTTAGCAAAGACAACGTTCCATAACGTTTGGGCTGAATTTAGGACAGTGGGCTGTACTCACTCTTTGAGGAGAAAAAAAAAAAAAAAGATCCTCTACAGGGTGTGAGGAGAAGGCTTGTGCATCCTAAGTGAGAGATCTGAACATATCTGGAAACCCTCATACCCCAGAGGATGGCCTGAGGGAGCCAGCAGCCTGCTACTGAAGTCTTTCCTTCCCTTCAGTGTTATGCTTGGTAGTTGCTCGACAGGTGGTGTTTAGAAGATTTTAGATGTAACCAGCTTCCCTCTTGCTCTTTCACTGAACCCTTACTGTAGTTAACCATGTACAAATGCTTCTCATTTTAACTCCTGCAG
Seq C2 exon
TTCAACAGCTTTGAGCAACTCTGCATCAATTACACTAATGAGAAACTGCAACAGTTTTTCAATCATCACATGTTTGTCCTCGAGCAAGAAGAATATAAAAAAGAAGGCATTGAATGGGTATTTATTGATTTTGGCATGGACCTGCAGGCCTGTATTGATCTAATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTTGTATGCTGTTGGGGCCT
R:
TCTCAATTAGATCAATACAGGCCTGC
Band lengths:
318-884
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]