RnoINT0096427 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54301026-54302212:-
Coord C1 exon
chr11:54302063-54302212
Coord A exon
chr11:54301197-54302062
Coord C2 exon
chr11:54301026-54301196
Length
866 bp
Sequences
Splice sites
5' ss Seq
GATGTAAGT
5' ss Score
9.11
3' ss Seq
TCCTTCCTCCCTATTTATAGTAC
3' ss Score
7.23
Exon sequences
Seq C1 exon
GTAACCTATGCAGTTGGTGCACTCTCTAAGTCAATATATGAGAGGATGTTTAAGTGGCTAGTGGCACGCATGAACCAGGTCCTGGATGCCAAGGTGACAAGCCACTTCTTCATTGGTATTCTTGACATCACTGGTTTTGAAATACTTGAT
Seq A exon
GTAAGTATACATGGTAAGAGCAAAATCAATGAATATTTCAAGGAGATTAAAAAATTCAATTTGTGAAATGTAACTACTAGAAAACATGATCAAAGCATGCTAAGAATCATTATACTTGATATCAATGGGCATGCTAATGTGGAAAGAGTAATATTTTGAATATCTTACAGGTTATCATTCCTAGATAATAACTATAGTCAACTAATCACTGTTCAAAGAAGGAAAATTAGTTTCTCCCCTGGATGAGCTTGTTATAAGCTGTCCAAACAGAATGGTTGGTCAGCCCTGAAACCATATACAAGTAAGCAACAAAAACAGACTCAGCAGATTGTTATAATGCATTTGCACACACACACACACACACACACACACACACACATTTAACAGTAGTAATTAGAGAAAAAAGGCTATGAACTTGAGAGTGGGGGAGCATGGAAAGAGTTACAGGAAGGAAAAAGACGGGAAACTGATATGTCTATTTCAATTAGGGTATAGTTAAAGAAAACCAAATTAACAAATAAAAATAATTTTTATACCTAAATTCTAAGGGCTTTTTCATTAGAGGATAGCTACAATTATTAACATTTATTATTATTAAATTAGTGTTAACTATCTAATTTCTTAATCTATATTTAAGTCAGAGTAAATAGAGGCCTTTTGTGAATTTTTAGTCATAGCTCAATTGAACATTATTTTACTGTAATAATCATTAGTTTGTAGATATATCTGAAGGAGACAGGAATTTAGCTGAGTACTTTTAATGGTTAAGTATTCTTGCCATCATGTGATGACAACTACAATTTTTTTCTCATCACCATGCATTCTTGCAAGTGGAACATTTAATTCTCCTTCCTCCCTATTTATAG
Seq C2 exon
TACAATAGTCTCGAGCAACTCTGCATCAACTTTACCAATGAAAAGTTACAACAGTTTTTCAATCAGCAACTGTTTGTTCTGGAGCAAGAAGAATGCAGGAAAGAAGGCCTTGACTGGATGTCCATTGACTATGGTCTGGATTTGCAAGCCTGCATCGATCTCATTGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.3=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(8.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTGGTGCACTCTCTAAGTCA
R:
TTCTCAATGAGATCGATGCAGGC
Band lengths:
310-1176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]