BtaINT0097243 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53563883-53569692:-
Coord C1 exon
chr1:53569574-53569692
Coord A exon
chr1:53564080-53569573
Coord C2 exon
chr1:53563883-53564079
Length
5494 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGG
5' ss Score
6.6
3' ss Seq
CCTGTGTGTGTCCCCTGCAGTCA
3' ss Score
10.27
Exon sequences
Seq C1 exon
GTGAGTTACGGAAAAGGCTGGAAGAAATGGAAGCTCTGATAAACCAACTTTCCAGGGAAAAGAGTATCTTCACTCTGCAGATTCAAGACCTGAAAGGGCAACTGGCAGAAGAAACCAAA
Seq A exon
GTAAGGCATCTATTATTTCTCACCAGGCATTTCATGGCATGTTTTTTTTTTTTTTTAAATAGTGCTTGCTAGGTTGGCTTGAATATCTTCTTATATAAAGGAAGAGGGGTAAGTGCTCTCGCAGTTAAGGAAAAAAAGACCTGTTGGATCTTGGATATGCTGAGAAGGACTCTGATCACTGAAGGATCATCCTCAGTAATTTAAATTGCTTTTCTAGTTTGTCAGATTTAGAGCAAGGAAACTGTGTTTCCATTTTGCATTATTACTTGAACAGAGCATCAGCAAAGTTCTTTATGGATTTTTGATTCTGAATTGCACAAAGAAGTGGAATTAATTAAAAGATCAGGATAAAATGAATGGGACTGGATTCATTCAATATTACTTTTAAATTGTCAAGTGAATTATAGATATTAGTTATTTCTTTTCAAGAGAATATATAATGTTGCTAGTAGGTGATCTCGGTAGATGTGATTCTTTAATGTTAAAGCATAGTGACTAAAGTGAGAGATGGATTCTTTGAGCCCTGGTATTCAAGTCTATTCTTATTTCATATTCAAGGCATCTTCTAAGACCCCAAAGGACTTCACTTGTATATAATCTCACTGAAAAGGCATCTACTCCAAGGGTAAAAGCCATTGACTCTGCAGACTTCTCTTTTTAAATGTTTTCTTTTATCCGCCACATTCTCCTCATTTTCTATATTACACGTACATTTAAAAATTACTACCATGATTCATGCTTCAGACATCATGCTGGATGCTTCTTTGATGTCATCTAAACCTTCAGATGTTAAGTCATATGAAACTGGTAGAATTATTTTCTTTTTTTTACATGAAGTAACCAAGGCTCTGAGAAGACAAATAACTCATCCAAGATCATGTAGCTAGCAGTAGACTGTAGGAAGTTTAGCAGGTTCTGAAATGACTAGATTTATAGTTTAGTAGATCTCTCTGGCTGACTTCTCTGGTATGCCAGGCTTCCAACTGGCATATCAGGCCGCTTTCTCAGGCCAAGCCTCCTTCTGTGACCCTACCTTCTATAGCTGCGTCTTGCATTTACTCACTTCTCCTGGAGATCAGTGGAGAAATAACTCCAGAAAGAATGAAGGGATGGAGCCAAAGCAGAAACAATACCCAGCTGTGGATGTGACTCATGACAGAAGTAAGATCTGATGCTGTAAAGAGCAATATTGCATAGGAACCTGGCATGTCAGGGCCATGAATCAAGGCAAATTGGAAGTGGTCAAACAGGAGATGGCAAGAGTGAATGTTGACATTCTAGGAATCAGCGAACTAAAATGGACTGGAATGGGTGAATTTAACTCAGATTATCATTATATCTACTACTGCGGGCAGGAATCCCTCAGAAGAAATGGAGTAGCCATCATGGTCAACAAAAGAGTCCAAAATGCAGTACTTGGATGCAATCTCAAAAACCACAGAATGATCTCTGTTCATTTACAAGGCAAACCATTCAATATCATGGTAATCCAAGTCTATGCCCCAACCAGTAACGCTGAAGAAGCTGAAGTTGAACAGTTCTATGAAGACCTATAAGACCTTTTAGAACTAACACCCAAAAAAGATGTCCTTTTCATTATAGGGGACTAGAATGCAAAAGTAGGAAGTCAAGAAACACCTGGAGTAACAGGCAAATTTGGCCTTGGAATACGGAATGAAGCAGGGCAAAGACTAATAGAGTTTTGCCAAGAAAATGCACTGATCATAACAAACACCCTCTTCCAACAACACAAGAGAAGACTCTACACATGGACATCACCAGATGGTCAACACCGAAATCAGACTGATTATATTCTTTGCAGCCAAAGATGGAGAAGCTCTATGCAGTCAGCAAAAACAAGACTGGGAGCTGACTGTGGCTCAGATCATGAACTCCTTATTGCCAAATTCAGACTGAAATTGAAGAAAGTGGGGAAAACCACTAGATCATTCAGGTATGACCTAAATCAAATCCCTTATGATTATACAGTGGAAGTGAGAAATAGATTTAAGGGACTAGATCTGATAGACAGAGTGCCTGACGAACTATGGACGGAGGTTCGTGACATTGTACAGGAGACAGGGATCAAGACCATCCCTGTGGAAAAGAAATGCAAAAAGGCAAAATGGCTGTCTGGGGAGGCCTTACAAATAGCTTTGAAAGAAGAGAAGTGTAAAGCAAAGGAGAAAAGGAAAGATATAGGCATCTGAATGCAGAGTTCCAAAGAATAGCAAGAAGAGATAAGAAAGCCTTCTTCAGCAATCAATGCAAAGAAATAGAGGAAAACAACAGAATGGGAAAGACTTAGAGATCTCTTCAAGAAAATTAGAGATACCAAGGGAACATTTCATGCAAAGATGGGCTCGATAAAGGACAGAAATGGTATGGACCTAACAGAAGCAGAAGATATTAAGAAGAGGTGGCAAGAATACACAGAAGAACTGTACAAAAAAGATCTTCACGATCCAGATAATCACGATGGTGTGATCACTCATCTAGAGCCAGACATCCTGGAATGTGAAGTCAAGTGCGCCTTAGAAAGCATCACTACGAACAAAGCTAGTGGAGGAGATGGAATTCCAGTTGAGCTATTTCAAATCCTGAAAGATGATGCTGTGAAAGTGCTGCACTCAATACGCCCGCAAATTTGGAAAACTCAGCAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCCCAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACTGCACAATTGCACTCATCTCACACGCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAGCAATATGTGAACCGTGAACTTCCTGATGTTCAAGCTGGTTTTAGAAAAGGCAGAGGAACCAGAGATCAAATTGCCAACATCCGCTGGATCATGGAAAAAGCAAGAGAGTTCCAGAAAAGCATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGACTGTGTGGATCACAACAAACTGTGGAAAATTCTGAAAGAGATGGAAATACCAGACCACCTAATCTGCCTCTTGAGAAATTTGTATGCAGGTCAGGAAGCAACAGTTAGAACTGGACATGGAACCACAGACTGGTTCCAAATAGGAAAAGGAGTACGTCAAGGCTGTATATTGTCACCCTGCTTATTTAACTTATATGCAGAGTACGTCATGAGAAACACTGGACTGGAAGAAACACACGCTGGAATCAAGATTGCTGGGAGAAATATCAATAACCTCAGATATGCAGATGACACCACCCTTATGGTAGAAAGTGAAGAGGAACTAAAAAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGTCTTAAAGCTCAACATTCAGAAAATGAAGATCATGGCATCCGGTCCCATCACTTCATGGGAAATAGATGGGTAAACAGTGGAAACAGTGTCAGACTTTATTTTTGGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAGTTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATGACCAAGCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAAGGTCCGTCTAGTCAAGGCTATGGTTTTTCCTGTGGTCATGTATGGATGTGAGAGTTGGACTGTGAAGAAGGCTGAGCACCAAAGAATTGATGCCTTTGAACTGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCCATTCTGAAGGAGATCAGCCCTGGGATTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGGCACCTCATGCGAAGAGTTGACTCATTGGAAAAGACTCTGATGCTGGGAGGGATTGGGGGCAAGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACTGACTCGATGGATGTGAGAACTCCGGGAATTGGTGATGGACAGGGAGGCCTGGCGTGCTGTGATTCATGGGGTCGCAAAGAGTCGGATACGACTGAGTGACTGAACTGAACTGAACTGAATCACCGTGGCTGCCTCACTGCCTCTTAAATAAGCTGCCATCATTAGGACTATTCCCACTGTTTGAAAGCCCTTCTTGGAGGCCTTTGGGGCATGATGAGAAAAAGCCAAACATGTGTCCTCTTGTCAGTCTGTTTTATGATCTCAGTGCTCTCAGCAATCTTATTTATTAATTTTTGTACATACTTGTTTTCATATATCCTCCTCCATTTAGGTTCTTTGGACAAAGGCTTTGTCTCCATTTTATTTACTTTGGTTAACACTGTTGCTTAGAACATGTGTTCACTAAATATATATTAAATGAGAGGAAGGACCACAATTTGAAGCCAAGTTTCCCAGATTCTAATCCTCTGTCCTTCCCAGTGTTAGTTGCTTAGTCATGTCTGACTGTTTATGACCTCAAGGACTATAGCCTGCCAGGCTTCTTTGTCCATGGGATTTCCCAGACAAAAACACTATGGTGGGTTGCCATTCCCTTCTCCAGGGACTCTTCCTGACCCAGGGATTGAACCTGGCTCTCCCACATCACAGGCAGATTCTTACTGTCTGAGCCACCAAGGAACTAAATATTATTCCTCCTCATTCAAAGCCCTTCAGTGTCTGCCTGAGGCTGCCATTAACCAAGCCTTGTGCTTTCAGAGCTGCATCTGGGAAGAGGTTTCTTCCTAATTTGTATTAAGGACCCATGAGGACTGGCAGAGACCCTGCTTCTTCCCACTAGACTAGGTTATCTCTTGGGAATGATGTTGCTAGGTTAATCAAACCATGCCTTAAGTGACAAATAATTATTAGCTCTACAGTCCAATAAATACAGAAGCCACTACTGTGCTACAGGTGGCTACCTGAATTTAAATTGATATTAATTAGAATTAAATAAAATTGAAATTCAGTTGGGCACATTTTGAATGTTTAACAGCCACATGACTAGTGGTTACCGTATTGGACAATATATATAGAGAGAATATTTTTATCACTACGGAAACTTCTATTGGATAGCACTGTTTTAAAGTAATAAAGATTTTAGAGATTTGCATGTAAAATAAAAGATTTTGTTTTCTTTATCAATGGAATGAAAAGGCTAGACTAAACTCAGTGGTCCTTTCTAGCCCAAACGAGACCAGTGTCTTGTATATTGCTAAATATAAATCTTACTACCTAAGTGATAGTGAGTGTTTTGCTACCTTTGCATGCTGCACTATTTCTAGAACTCCAGGCCTGTCTATTATTGAAGCCCACATTGTCAGGCTGGCATTTCCCTAAATAGAACTCTCTTCCTTGTTTTAATGGCAGCAATTAGATACCCTCTCCTTTCTCTTGTCCCAAATTCTCTCCCTAGTATTAACTAGCTAGGTTCAGGTTCAGCTTGCATCTGTGGCAGGTGGTTATTAACCTTATCTAAAAAAGATGATGTCACCTCTGAAGCTTTCATCATTAATGGTGGTGGTGCCTTTTTATACCTGTGTGTGTCCCCTGCAG
Seq C2 exon
TCACAGAGTGCCCTGGCCCAGGCCGTGAAGTCGGCCAAGCGTGATTGTGACCTTCTACGAGAGCAGTACGAGGAAGAGCAAGCAGCCAAGGCTGAGCTGCTGCAGGCCCTGCTCAAAGGCAATGCTGAAATGGTGAAGTGGAGGACCAAGTACGAGGATGACACCATCCAGCGTGCTGAGGACTTGGAGGATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.5=100),PF0003816=Filament=FE(24.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(7.6=100),PF0003816=Filament=PD(28.0=68.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development