GgaINT0119199 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86893193-86893979:-
Coord C1 exon
chr1:86893861-86893979
Coord A exon
chr1:86893390-86893860
Coord C2 exon
chr1:86893193-86893389
Length
471 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
TGACCTTTCTATCCCTACAGTCC
3' ss Score
10.87
Exon sequences
Seq C1 exon
GTGAATTTGTAAGACAGCTTGAAGAGAAAGAGTCGCTGATAAGTCAGCTGTCCCGAGGAAAAACATCATTTACACAGCAGATTGAAGAACTTAGGAGACAGCTAGAAGAGGAAACCAAG
Seq A exon
GTAATGCTTTGACTGTGTCCCATTCATTGAAATGGAATAGGAAGAACTGCTCATGTTCATTTGTATCCTGGATAAAAACTGAAATGAGATATAGGAATGAGAACACTACCTGCTAACTGAACGGATATAAATTTCTGCCCTGACAGCAGCAAGTCAAAGGAGAATGGTTTTGAAAAATAAGTGGTGTTCATAATTGCTAAATAAAACTGACCTAATAGTATATGCAAAATCTCAGATCTTGCATCTTATAAATTGAGATGTTTCTCTAAAGGTATGAGAATATCTTCAGTTTTGGTAGTTTGCCCAGCATGTTATCTGCTGGGATGACTTTTTGCCTGACTTGTCAAGGACTAATAAGGCCAGAAGCAAAAAGAAACAAAGACTTTACCCTCTGTTTGAATTTCTAGGGCATGCTTGTTTGAGTTATGCTGCAGGTAACCCTGCAATGTTGTGACCTTTCTATCCCTACAG
Seq C2 exon
TCCAAAAATGCTCTGGCTCATGCCCTGCAAGCAGCCAGGCATGACTGTGATCTCTTGCGAGAACAGTACGAGGAGGAGCAAGAAGCCAAGGCAGAGCTGCAGCGGGCTCTCTCCAAGGGAAATGCAGAAGTGGCACAATGGAGAACAAAGTATGAAACTGATGCCATTCAGAGGACTGAGGAACTGGAAGATGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.475 A=NA C2=0.530
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.4=100),PF0003816=Filament=FE(25.8=100),PF0003816=Filament=FE(12.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(12.4=100),PF0003816=Filament=PD(22.5=51.5),PF0003816=Filament=FE(21.1=100),PF078897=DUF1664=PU(19.2=22.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAATTTGTAAGACAGCTTGAAGA
R:
TGGCATCTTCCAGTTCCTCAG
Band lengths:
315-786
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]