MmuINT0103393 @ mm9
Intron Retention
Gene
NA
Description
NA
Coordinates
chr16:49153568-49155825:+
Coord C1 exon
chr16:49153568-49153686
Coord A exon
chr16:49153687-49155628
Coord C2 exon
chr16:49155629-49155825
Length
1942 bp
Sequences
Splice sites
5' ss Seq
AGGGTAATG
5' ss Score
5.98
3' ss Seq
TGTGTGTGTGTGTTTTACAGTCT
3' ss Score
10.41
Exon sequences
Seq C1 exon
GTGAGTTCTTTAAAAGACTAGAAGAAAAGGAGGCCCTGATAAGCCAACTTTCCAGGGAAAAGAGCAACTTCACTCGGCAAGTTGAAGAACTGAGAGCACAGCTGGAGGAGGAGAGTAGG
Seq A exon
GTAATGTGGCAATCATGTCTCCCCAGTCAGGTGGCAGATGTTTAAGAAACAAAACAAAGCGAACCAAAAGCAGTGCTTGGATGGTGAGACTCAGTGTTTCCTCTTGAAAAGGAGCACGGGAGAAACACTCAGCACATAGTGGCCTGTTGGTCTTTGTGCCGGGAAGACCGCTGGTACCTGAAGGAGTTTCCATATTATTAAAATTACATCTGTAGTTTGTCAGATTTAGGTCAAGAAAGGTGTGTGGTTCTACCATGCTATTTGAGCTGAAAGTCCTCAAGTGTCAAGCATTTAATCGTCCATCTCCAAGTGGTACATTTCCAGTGAGTTTCCCTCTATGGATGTGTAAGAATTTACTCCTGTTTATTGGATTCTGATCATTTTATATATTCTCTGTCCCTTTCCATCTCTCTTCTGGTTTACTTTTGATGTTTGCTGATTTTCTGTTGTCATAAAGTTTTATTATTTTTAAAAAAATATTTTTGTAGACTTACATTACAATTGAGATTTATTATATATGTGCAACACATCATTTATCCCCCTGGAGAAAAGTAAAGAGACATCTATCCACCATATGTAGAGAGGGTACCAACATATCAAAGAGAAAAGTTCTTCCAGGTCCAGTATGATGGACCAATGAGTTTAATGTGACTACCTACAGGAACATGGGTGAGTGGAAGATACCACCAGGAAACCCTTGGGATGTGTCTGGACAGCTACACCATTGAAGCATACCTCTCACAAAAACATGCACCATTGAAAGTCATACCAGGTGACATACTGGCAGCTACACACCCCAAACTCCCTACCCTGAGACAACTTTCCATGTTCTTTATAACCTTAAGAAGTAGAGGAACCTTGTAAAGCTATCACAGAGTCATAAGCACAGTCACTCTAAGTCTCATAAGCCCATGGGCCTTTACTCTTCCTCTACAACATAATGCTAATAGGCCCAGGCTCTAGAGGGTCTCCTGAAAGTGATAATAGCTGCTCTCCTCCAAGATGGCAGTAGTCATGTCCTAATCAGACAAAACAGTTGCACCACTGTGTATGTGTGCTTTCATAATGGTACCACTGCTCTTCTATAACCACATATTTTCCTTCATAATGATGCTACTGTTCTCGGCTGTGTGGAGCTTCATTTCTCTGTAAGTCCTCTGTGCTTCCTATGGAACCAGTCTCACTCACAATGGTGAGTCCACTCCCCTTTGCTTACCTTGGATTGTCTTTATTTCTCTTTAATGGTTGATGGATTCTTTCCTCAGAACTTGATCATATCATTCCATTTCCTCCTGGCTTGTAAACGTTCTGCTAAGAGTCTGCTATTAGTGTAATTGGAGCTCCCACAACGTGAATTAGTACTGCTTTTCTAGATTTATAACTCTCCCTTTGCCTTGGATTTTTAACTTAGTTGAGTATGTTCTCATGCTACAGACTTGTATTGGCCAAAACTCTTAGGGATCTTTCAGAACCTCTTAGAACCTGGTGCCTGTTATCTTCATATTTCTCAAGACTGGTGAGATGCTACAGAAAAACTCATCATACCCCTGCCCCTTCAACCTGGATGCTTATGGAATTCTCATAATCTGAATATTTTTATTAAATGATATTTTATAAATCTCTAGAGTTTTCTTCAGAATTCTGTGCTCATCCTCTCAATATCATTTGGTGTTGTTGCTCCTCATTCACCATGGGGATATGTGGCAGAGGATGCCATTAGCTCATCCATGTGCTCCCAAATGGACCCTTGCCTAATAAAGTGCTTACCTCCCTGGGTTTAAGTTCAACTTGAATTTTATAGATAGTGTTGGCTTTACTTGAAAAGACTATGTCCCTTCCAAAGATTGCATTGCTAATGGTAAAACAGGCATGTGTGTGTGTGTGTCTGTGTGTCTCTGTGTGCCTCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTTACAG
Seq C2 exon
TCTCAGAGTGCCCTGAGCCATGCCCTGCAGTCAGCCAAGCATGACTATGATCTTCTGAGAGAGCAGTATGAAGAAGAACAAGAAGTCAAGGCTGAGCTGCACCGGGCTCTATCTAAAGGCAACAAGGAAACAGTGCAGTGGAGAGCGAAGTATGAACATGATGCTATGCAGAGAACTGAAGACTTGGAGGAAGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
-Myh15:NM_001166210:29
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACTAGAAGAAAAGGAGGCCC
R:
TGGCTTCCTCCAAGTCTTCAGT
Band lengths:
302-2244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: