BtaINT0097246 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53554718-53557974:-
Coord C1 exon
chr1:53557850-53557974
Coord A exon
chr1:53554834-53557849
Coord C2 exon
chr1:53554718-53554833
Length
3016 bp
Sequences
Splice sites
5' ss Seq
GAGGTATTA
5' ss Score
6.46
3' ss Seq
TTTTTATTTGTGTATTTCAGGGA
3' ss Score
11.2
Exon sequences
Seq C1 exon
AGGAGATTTCTAATCTGACAAATCAGGTGAGAGAAGGAAAGAAGAACTTAAGTAAAATGGAAAAGGTCAAGAAACAGATTGAACAAGAAAAGAATGAAGTTCAGATGGCATTGGAAGAGGCTGAG
Seq A exon
GTATTACCTCTGGGGAGCAAAGAAGACTTTTATCATTGTGACAGTGCAGAAGATCTGCATTCTAATAACACCACCACCACAAAGACACTTAAGGCTTAACTGCATGCTTGGAACTATGCCAAGTGCTTTGTATGCACTATTTTGTGTAATATCCCTAGCAGACTGTTGTTCTCATTGTGCAAATGAGGAGATTGAGGCTCATTGAACAGGATAAACAATTGTGATGCAGACTCTTGACTGTAAGGAAAACAGGAACCGTGTGTATCTTGTTCCCTGACTTTTCCCCATTACCTAGACCCTTGCTGCTCTAAATGTGGCCTGGAGACCAGTTGCCTGGGCATTGCTGGGGAGCTTGTTAGAAATTCAGACTCTCAGCCCTCTCCCCAGCTCTGTTGAATCAGAATCTGCATTTAAACAAGATTCCTGGGAGGCACTGGACTAGAACATTGCCTGGTGTATAGGAGAAGTTCAATAAATATTTGTTGGATGTTTCATAGCTAAATATCCTCATACCTGACCCTCTCTTTAAATGAAATCAGTCAAAACCTTTTTTTTCCCCCCAAAACTTTGGTTTTAAAAATGAATTCAAAGCAATGTTCTCATTTGTTGCTGAAAATTCATCTTTGTGAAGGTTGTTTGATAGGAGTGTTTTCAGTGTTATGGATTAAATGTTCAGGAAGAATATCTGGCTTTATCCCTAGGCATGTGCTAGCTAGTGATTGAAAGGACCCCCGAGAAAATATTTTTGCCAAAGAGGCTGAACTCAGAAGGAAGTTATCCTGTCATGGTCATTAAGTAGTTAACAAGGCCTACAAAGCTTCTGTTCTCACAGTTGAATTGCATTTTCTTGACCCACCCTTTGACCAAGCACCAGGTAGCATTCAAAATGCACGTCTCATCCACTTACCTTCTAACAGAGACAATCAGTTTTAAAAAGGCATAGCATTCAGTTTCAGGCACAGGCCTTTTGAAAGGTGCTGTAATGAAAAAATGAAACCCCAAAGGATTGCTCTATGTCAAGCAATGTCAGTTTATCCCACCATCACATTTCTGTAAGAAATCTGCCAGGCAGATGTGTCAACTGGATGGCTCTTGACAGAGCACTTGCCTTTTCATGCAAATTGTTTTCTGAGATCTATATTTTATATAGAATCCTTTCAGTTGGCATTGTGGTGTCCCCTAAAGTGGTTGAATTTTGTTTCATTCACTTGTTTCCTTTGGTTCTCCAGTCACCTTGGCTAGGAACTTTCTAAAGCCACTACCTTAACCTCCAAAAGTAACTTTTACAGTAGAAATTTCAAGCAACATGAGAAGCCAATGAGAGCTATGATTGGGCAAGGTTAATGTTAGTCCTACATAACATGTAGAAGTCTTTTTCATTAAATTGACTGGCACAATGAAGGGAGATGGTTAAGGCCATAGCGTTCCTACCATTTAGTAGCACTGCTGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCGACTCTGTGCGACCCCATAGACGGCAGCCCACCAGGCTCCCCCATCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTCCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGTCCGACTCTTCACGACCTCATGGACTGCAGCAGCCTACCAGGCTCCTCTGTCCATGGGATTTTCAGGCAAGAGTACTGGCGTGGGGTGCCATTGCCTTCTCCATTAGTAGCACTAGATGGCGTTATATTCTATTCACATTTTCTCAAGTTTTGTCTTCACCTGCATCCATGAATACTTCATCAACTTGGACATGTATTTGTAATACTGGGTTATTTATTTTTCTGGGTGAGCCTTAATGAAAAACATTATCAGACTATTTTTGAAGTCACAAAGCTCAAACTATTGCAGGTCACCTTCAAAGATTCACTTTCTCAGGGCATTCAAAAGGGTTAGAGGTGACAGTTTCCCCTGGAAGGAAAGGCACCATTCCCTCAGAGGAAATTGCTATCCAAGCATTTTTTAAATTTTCTTTTATATTGAAGTTAGTATTGTGAGAACAGCAGCAAGGCTTTAAGCCATATTAAATTCCCAACATCTTTCTTATTTTTATTTTGAAACTGCTACTTGGTTTTACTTTCCACTTTTGGTATTATGTGCTAAGCACTCCTGAGAAGAGGCTATAAAAGTGGCTTCTGCCCTCAGGACTGTCTGCCAGTAGCCAACTGACCAATAGATCGTTGTCACCTCTTGTCCCCTTTATAAACATCCTCCTCTGTCATCTCCAAGTGTTCTGTTTGTTTCTTCTTCTATATGAAATTTTATCTGTGGAACAGACTTTCAAATTTAATCAGACCTACCCTTTTCAACTTGAAACACCTTTATAACATTTCTGGAAGTAATTGCCTTGCCTATATTTAACATTCAAAGGAGCAGGAGCCTTCCCTGCCTGTCAGAGCAATCCATTTGAAGTAATAGTAATAGTTACGATAATAATGGCTCACACCAAGCATTATGTGTCAGGTATACCCCAGTTTCCTTTATTTGAGCGCTCTCCTGTTCCTTGCTCCCCAAATGCTTTCAACTTTTTCTCTATCCCTCTGTGATGTTCAAAATTGAAGTTTCCAGTAGGAGTTATCACCTTCCATGTTTTAGCTTTCATACTTTTATTGATTCATCCTAAAGATGGAACCACTAAAAAAAAGTCTAGAGAAATAAATTTAAAAATTGAAATGTAATCATAGACAAGATTGAACATTTCTACTTAAAAAAAAATGCTTGAGATTCTAGTTCTTGAACTACAGCTGAAAGCCCTCCGGATGTCAGAGCTATAACTAACATGACAAAGAAAGGTAATCACTTGTCTCTCATCCTGTTTCAGTCTTCAGGAATCTGATTTGAACTTTGACTATTCCTAGCAATTCCAAAGAGAGCTCCATTAGTGACATATATTTAGAGAAAAAAATACTTTTGTCCAAAAGTGGGCTTAATTTAATGCTTTTTATTTGTGTATTTCAG
Seq C2 exon
GGAGCTCTGGAGCGTAATGAAAGCAAGGTTCTTCGTTTGCAGCTTGAACTCTCAGACACTAAAGCGGAACTTGAAAGGAAGCTTTCAGAGAAAGATGAAGAAATAGAAAATTTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.308
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development