GgaINT0119202 @ galGal4
Intron Retention
Gene
ENSGALG00000015358 | myosin
Description
myosin heavy chain, cardiac muscle isoform [Source:RefSeq peptide;Acc:NP_990097]
Coordinates
chr1:86888983-86891477:-
Coord C1 exon
chr1:86891353-86891477
Coord A exon
chr1:86889099-86891352
Coord C2 exon
chr1:86888983-86889098
Length
2254 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CATGGTGCTTTCTCTTTCAGGGA
3' ss Score
12.73
Exon sequences
Seq C1 exon
AGGAAATTTCTGATCTGACCAATCAGATCAGTGAAGGAAACAAGAACCTCCATGAGATAGAAAAAGTCAAGAAGCAGGTAGAACAAGAAAAGTCAGAGGTTCAGCTAGCTCTGGAAGAAGCAGAG
Seq A exon
GTAAGGAGAGAGAACTCAAAGGGTTGAGAAATTATTTCTTTCTCATGAATTTTTTGATCCTCTCAGCTACGCTGCAAATGTGCTAGTAGCAAGTGGAACTGCCCTGCAACCAGCTCCCCTGAGCTTGCTAGCCAGCCATGGGTTTCATGAGAGACTGGTTTCAAGAGAGACTCAAGAGAGATCTCAGCTCTGAGATCACCAAACAGAGGCTGCTTCAAAGGAGGTGTCTTGTAGGGGTTGTTATTGTTTCCTTTTTTTTTCCCTTTTTTCTTCTTTTTCCTTTCAGGAAGCACAAAAGTGCTCTGCTCAACTTCTTAAAAGCCAGCATAGAGCATTCCAGTCTTTCACGACATTTGGGAATTGTGGTTTTACAGTATTTTAACAGATATTTCTAGTGTCTAGCTTCCATCAACAAATTCACCATTTTCTATCACAGAGCATAAGAAAACAAACCTCCAGATGACATTAAATCCTACAAGGCTTAAAATATTGCTTTCGATGCTGCACTTCGCTTTAAAAAAATAAAGTGGTCCCAAGCTTGGAAACAAGACAAAAACAGGCCATCCAGAAAATCTTTTACTCCCATAGGAGTTTGGTGAAGACACTTAACATCACTGTTTTTCTTTTTATAGTGACGGGTATGCATACATCCAAGAGGGATGGCCCATCACGTTTTACAGAAACAAACCAACAATGCAGAACAGACTGACTGGAGATTCTGATTATTTCCAGGGTTTTTCTGGGAGCTTGGTGCATTGCAGAGCTAGGAAGGGGGTGTAGGTGTTGCTGGCTAGAAGCAACACAGCAAGGGATTGTAGGGGAGGGCTGTGTTTCGTTTGAATTGTTCTCTTCATAGCATCTGCTGAAGTGAGCATCATGCAGCAACAGGGATCCGTTAATGCCTTACATGCTGTGCAACTTCTTTTGTCTGTTACAGGATGCTTTACAGCTTGCAGGGATTTCACAGCCAAACAAACAGGTCCCACAATCAGAGCAGAGGAAGTGGCATGTCTGTCTCCCCCAGCTCTGAGATGTGAAGGGTGATTAAATGCTTTGTCACCAAGCTTCTTCCTCAGGAAACAATGTCCCTTGAGGGATCCAAGGGGCACGCTTTACTTTCACAAACTGTGTGAAATAGTTTCCTGAATCTCTGAAGTTGGCAGCTAACCAAAGTAAAGCGATGATGTATCTTAATTGTGATAGAAATGTCTCAGTACAGACTTTCTCCCTCCCTTGTGGTTTGGGTTTCTGGCCATCATCACTGGTGCTTCTGTGTGCTGTTCCCAGTAACACGGGGTGGCTGCTTGGCATGAAGTGGCATGAAAAGTGGCCTGTAGCTGCTGCACAGTGGCCAGAGATAAGCAAGGATTTTGAACAGCTTTGCTTTCGGGAACCCCATTCTGTTTCTACCATCTCTTCAGGGAAACATAGAAAAGCCAGTGCAATTTTACCCTTCAGAGAGCACTTTCGAACTATGTGGTGTTCAGTTCCACTTTCCTTCTCCATGTGATGAGAGCAGCAGTGAGTTAGAGTGGCCCTGAACTTGGTTTGTGCACGACCTGAGAGTCAAAGAACTGGTGTTTAACTACTGGCTGCCGCCAGCACAGTTCTTGACCTCCGCGAGTGAGAGAGAACATCAGAACAAGGACAAACCTCCTCTGTTTTGTGATGTTTCCTTCATGTTAACTGGAAATAAGGGGCAGAATAGTTTTGTAGTTTGTCATACAGAGCTGATGCCTGCTATGTCTTTCCTTAAAGTCATATGCCATAATGAGATTGCGTATGTGGGAGGTTTTCAACACTCCCTGCTTTGGAGAGATCTTGATGAGCTGTATGTGGACCCCTTCAAGCTCCCAGCAATAATCTGGCTTCAGCTTCTCCCTCTCCCTTAGAAGCCCATGCACTTCCTGAGGGTGTCTGCACTGCAGTGCGGGGGAATGCATATGTTGGTATCAAAACCATGTAGGTAAGGCCTAAAGTACCTGGTACTTTGGTGAGCCATAGACTGCTTGAGAATTTGTACTATGAGGGGCTTTCTGCTCCATTTTCCAGCTGCCAGGTTGCATCAAAGGTGAATAAACGCATTTCTTTGCCAAGTAAGCAGCTCATGTCACTTGCTTAGAGATAGGGACAGTGGAGGAACGTTGCTACTGGGAACAGTGAGAAAAGCATGAAGGGAACATCTTTCTGCATCAGCTTGTGATTTGAAAAGAAAGAAAAAGCAACTGCAAGCTCATGGTGCTTTCTCTTTCAG
Seq C2 exon
GGAGCTTTGGAGCATGAAGAAAGCAAGACCCTTCGTTTTCAGCTTGAGCTTTCTCAGCTTAAAGCTGATTTTGAAAGGAAGCTGGCAGAAAAGGATGAAGAAATGGAAAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.897 A=NA C2=0.590
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.4=100),PF0003816=Filament=PD(10.1=79.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]