DreINT0099896 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24951770-24952722:-
Coord C1 exon
chr11:24952598-24952722
Coord A exon
chr11:24951886-24952597
Coord C2 exon
chr11:24951770-24951885
Length
712 bp
Sequences
Splice sites
5' ss Seq
GAAGTATGG
5' ss Score
3.5
3' ss Seq
GTCTTACCTTTTTGTGTCAGGGC
3' ss Score
7.9
Exon sequences
Seq C1 exon
AGGAGATTTCCGACCTCAATGACCAGATTAGCCAGGGCGGCAAGACCATTCATGAGCTGGAGAAGATCAAGAAGGGCTTGGACTTGGAGAAGACGGAAATTCAAGCAGCTCTTGAGGAAGCTGAA
Seq A exon
GTATGGAGTTTCTTTGTTTCTAAAAATTTTTGAAGGTGAAAACTTGCCTTACATTTACATTATGTTAAATTACATACCAAAGCAAAATGAAGCTGTTCATGTCAAAATGTCAAGCTGTTCATGTCAAAAGTTGTTAATATGTACATATGTTTATTATTACAGTGATTTTTACTTAATGGGACATTTCCAACTATTGAATTGTAAAAAAAAACATAAATTTGTTTTACATAACTGATGTAAAACACACAAAAAATACTTGAGGTGTTAACGATAAAGTAGATAAGTAATAAACCTAATAGAGTTAGAGATAACAGAAATCCATGGAAATTAAACTCATGTATTGAAAATGGCTTAAATATCTGATTTTAGTTTTTTAATTCTGTGCGTCAGAATTTCCAGAGATTTTTGTCATCCCTAACACATTGAGGTTTATTTCTTATTCTTATATTCTTCATCTTTAATACCTCAAGTATTTCAGTGTTTTACTTAGAATTAAGCCATTTGTATTTAGCATTACTGCATTTTTATATATTTATTTGATCTATTATAAAGAATAATGTAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATATAATAATTATATATAATATATAATTATGTGTAATTTAAGATACTCTCATTATTAAATTGTCTTACCTTTTTGTGTCAG
Seq C2 exon
GGCACTCTGGAGCATGAAGAGAGCAAGACTCTACGTATACAGCTGGAGCTCAACCAGATCAAAGCAGACACTGACCGGAAGCTGGCAGAGAAAGATGAGGAAATTGACAATCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.619 A=NA C2=0.744
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(27.5=90.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGATTTCCGACCTCAATGACC
R:
CGGAGATTGTCAATTTCCTCATCT
Band lengths:
240-952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]