BtaINT0097377 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64909896-64910235:+
Coord C1 exon
chr13:64909896-64910020
Coord A exon
chr13:64910021-64910119
Coord C2 exon
chr13:64910120-64910235
Length
99 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
3' ss Seq
TGGCTTGTTCTATACCCCAGGGG
3' ss Score
7.14
Exon sequences
Seq C1 exon
AAGAGATCAGTGACCTCACAGACCAGGTCGGCCTCAGTGGGAAGAGCGTCCAGGAGCTGGAGAAAGCCAAGAAGGCGCTGGAAGGGGAGAAGAGCGAGCTCCAGGCAGCGCTGGAGGAGGCTGAG
Seq A exon
GTCAGGAGTGGGGCGACGCTGACCCGCTGGCTCCTCTGGCCTCCCCTCTCAACATACGTTTGTGGACCTCCTGGCTCAATGGCTTGTTCTATACCCCAG
Seq C2 exon
GGGGCCCTGGAGCTGGAGGAGACCAAAACCCTGCGGATCCAGCTGGAGCTTTCCCAGGTCAAGGCTGAGGTGGACCGGAAGCTGGCAGAGAAAGATGAAGAGTGTACTAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=NA C2=0.410
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(25.0=83.3)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGAGCTGGAGAAAGCCAAG
R:
ATCTTTCTCTGCCAGCTTCCG
Band lengths:
171-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development