GgaINT0010727 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2587028-2587443:-
Coord C1 exon
chr20:2587319-2587443
Coord A exon
chr20:2587144-2587318
Coord C2 exon
chr20:2587028-2587143
Length
175 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
AGAGCTGCTGCTATCTGTAGGGA
3' ss Score
5.18
Exon sequences
Seq C1 exon
AGGAGATTGCTGATCTGACTGACCAGATAAGCATGAGCGGCAAAACCATCCATGAGCTGGAAAAGCTGAAGAAAGCCCTGGAGAATGAGAAGAGCGATATCCAGGCAGCGCTGGAGGAGGCTGAG
Seq A exon
GTGAGCCTGTGTTTCTCACTAAAGCTCGCACATGTCTGCTGCTCCTGAGAGCCCCTGGACTCCCTGCAGCTCTGGGGAGGTGGTGCTGGGGTGACTGGATCCTGCTTGTGGGGGCTGAGGCCAGGCTGGGGGGTCTTCCCTGGGGGACTTTTCACAGAGCTGCTGCTATCTGTAG
Seq C2 exon
GGAGCCCTGGAGCATGAGGAGAGCAAGACGCTGCGCATCCAGCTGGAGCTGAACCAGATCAAGGCTGATGTGGACAGGAAGCTGGCAGAGAAGGATGAGGAGTTTGAGAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:37
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.595 A=NA C2=0.538
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.3=100),PF041569=IncA=PD(27.5=92.9),PF045827=Reo_sigmaC=PD(27.4=76.2),PF0003816=Filament=FE(30.6=100),PF131661=AAA_13=FE(20.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(6.7=100),PF0003816=Filament=PD(2.2=7.7),PF131661=AAA_13=FE(19.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGATCTGACTGACCAGA
R:
TCAGGTTCTCAAACTCCTCATCCT
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]