RnoINT0096574 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151147703-151148059:+
Coord C1 exon
chr3:151147703-151147827
Coord A exon
chr3:151147828-151147943
Coord C2 exon
chr3:151147944-151148059
Length
116 bp
Sequences
Splice sites
5' ss Seq
GAGGTCAGG
5' ss Score
4.94
3' ss Seq
TGCTTGATCAACACCTCTAGGGG
3' ss Score
4.97
Exon sequences
Seq C1 exon
AGGAGATCAGCGACCTTACAGACCAGGTCAGCCTCAGCGGGAAGAGCATCCAGGAACTGGAGAAGGCCAAGAAGGCGCTGGAAGGGGAGAAGAGTGAGCTGCAGGCTGCGCTGGAGGAGGCTGAG
Seq A exon
GTCAGGGCTGGTCACAGGGGTGGGTGGACTCTGCTGTGTGGCTCCCTAGCTCCATTGGTCCTCAAATACCTGCCGAGGCTCCTTCTCCCTCCACACTGCTTGATCAACACCTCTAG
Seq C2 exon
GGGGCGCTGGAGCTGGAAGAGACAAAGACCCTGCGGATCCAGTTGGAGTTGTCCCAGGTCAAGGCGGAAGTGGACCGAAAGCTGGCGGAGAAGGATGAGGAGTGTACTAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=NA C2=0.410
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=FE(27.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.4=100),PF045827=Reo_sigmaC=PD(3.4=12.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCGACCTTACAGACCAGG
R:
TCAGGTTAGTACACTCCTCATCCT
Band lengths:
234-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]