GgaINT0010727 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2945123-2945538:-
Coord C1 exon
chr20:2945414-2945538
Coord A exon
chr20:2945239-2945413
Coord C2 exon
chr20:2945123-2945238
Length
175 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
AGAGCTGCTGCTATCTGTAGGGA
3' ss Score
5.18
Exon sequences
Seq C1 exon
AGGAGATTGCTGATCTGACTGACCAGATAAGCATGAGCGGCAAAACCATCCATGAGCTGGAAAAGCTGAAGAAAGCCCTGGAGAATGAGAAGAGCGATATCCAGGCAGCGCTGGAGGAGGCTGAG
Seq A exon
GTGAGCCTGTGTTTCTCACTAAAGCTCGCACATGTCTGCTGCTCCTGAGAGCCCCTGGACTCCCTGCAGCTCTGGGGAGGTGGTGCTGGGGTGACTGGATCCTGCTTGTGGGGGCTGAGGCCAGGCTGGGGGGTCTTCCCTGGGGGACTTTTCACAGAGCTGCTGCTATCTGTAG
Seq C2 exon
GGAGCCCTGGAGCATGAGGAGAGCAAGACGCTGCGCATCCAGCTGGAGCTGAACCAGATCAAGGCTGATGTGGACAGGAAGCTGGCAGAGAAGGATGAGGAGTTTGAGAACCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.538
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(22.6=73.8)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGATCTGACTGACCAGA
R:
TCAGGTTCTCAAACTCCTCATCCT
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]