GgaINT0119202 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90785470-90787964:-
Coord C1 exon
chr1:90787840-90787964
Coord A exon
chr1:90785586-90787839
Coord C2 exon
chr1:90785470-90785585
Length
2254 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CATGGTGCTTTCTCTTTCAGGGA
3' ss Score
12.73
Exon sequences
Seq C1 exon
AGGAAATTTCTGATCTGACCAATCAGATCAGTGAAGGAAACAAGAACCTCCATGAGATAGAAAAAGTCAAGAAGCAGGTAGAACAAGAAAAGTCAGAGGTTCAGCTAGCTCTGGAAGAAGCAGAG
Seq A exon
GTAAGGAGAGAGAACTCAAAGGGTTGAGAAATTATTTCTTTCTCATGAATTTTTTGATCCTCTCAGCTACGCTGCAAATGTGCTAGTAGCAAGTGGAACTGCCCTGCAACCAGCTCCCCTGAGCTTGCTAGCCAGCCATGGGTTTCATGAGAGACTGGTTTCAAGAGAGACTCAAGAGAGATCTCAGCTCTGAGATCACCAAACAGAGGCTGCTTCAAAGGAGGTGTCTTGTAGGGGTTGTTATTGTTTCCTTTTTTTTTCCCTTTTTTCTTCTTTTTCCTTTCAGGAAGCACAAAAGTGCTCTGCTCAACTTCTTAAAAGCCAGCATAGAGCATTCCAGTCTTTCACGACATTTGGGAATTGTGGTTTTACAGTATTTTAACAGATATTTCTAGTGTCTAGCTTCCATCAACAAATTCACCATTTTCTATCACAGAGCATAAGAAAACAAACCTCCAGATGACATTAAATCCTACAAGGCTTAAAATATTGCTTTCGATGCTGCACTTCGCTTTAAAAAAATAAAGTGGTCCCAAGCTTGGAAACAAGACAAAAACAGGCCATCCAGAAAATCTTTTACTCCCATAGGAGTTTGGTGAAGACACTTAACATCACTGTTTTTCTTTTTATAGTGACGGGTATGCATACATCCAAGAGGGATGGCCCATCACGTTTTACAGAAACAAACCAACAATGCAGAACAGACTGACTGGAGATTCTGATTATTTCCAGGGTTTTTCTGGGAGCTTGGTGCATTGCAGAGCTAGGAAGGGGGTGTAGGTGTTGCTGGCTAGAAGCAACACAGCAAGGGATTGTAGGGGAGGGCTGTGTTTCGTTTGAATTGTTCTCTTCATAGCATCTGCTGAAGTGAGCATCATGCAGCAACAGGGATCCGTTAATGCCTTACATGCTGTGCAACTTCTTTTGTCTGTTACAGGATGCTTTACAGCTTGCAGGGATTTCACAGCCAAACAAACAGGTCCCACAATCAGAGCAGAGGAAGTGGCATGTCTGTCTCCCCCAGCTCTGAGATGTGAAGGGTGATTAAATGCTTTGTCACCAAGCTTCTTCCTCAGGAAACAATGTCCCTTGAGGGATCCAAGGGGCACGCTTTACTTTCACAAACTGTGTGAAATAGTTTCCTGAATCTCTGAAGTTGGCAGCTAACCAAAGTAAAGCGATGATGTATCTTAATTGTGATAGAAATGTCTCAGTACAGACTTTCTCCCTCCCTTGTGGTTTGGGTTTCTGGCCATCATCACTGGTGCTTCTGTGTGCTGTTCCCAGTAACACGGGGTGGCTGCTTGGCATGAAGTGGCATGAAAAGTGGCCTGTAGCTGCTGCACAGTGGCCAGAGATAAGCAAGGATTTTGAACAGCTTTGCTTTCGGGAACCCCATTCTGTTTCTACCATCTCTTCAGGGAAACATAGAAAAGCCAGTGCAATTTTACCCTTCAGAGAGCACTTTCGAACTATGTGGTGTTCAGTTCCACTTTCCTTCTCCATGTGATGAGAGCAGCAGTGAGTTAGAGTGGCCCTGAACTTGGTTTGTGCACGACCTGAGAGTCAAAGAACTGGTGTTTAACTACTGGCTGCCGCCAGCACAGTTCTTGACCTCCGCGAGTGAGAGAGAACATCAGAACAAGGACAAACCTCCTCTGTTTTGTGATGTTTCCTTCATGTTAACTGGAAATAAGGGGCAGAATAGTTTTGTAGTTTGTCATACAGAGCTGATGCCTGCTATGTCTTTCCTTAAAGTCATATGCCATAATGAGATTGCGTATGTGGGAGGTTTTCAACACTCCCTGCTTTGGAGAGATCTTGATGAGCTGTATGTGGACCCCTTCAAGCTCCCAGCAATAATCTGGCTTCAGCTTCTCCCTCTCCCTTAGAAGCCCATGCACTTCCTGAGGGTGTCTGCACTGCAGTGCGGGGGAATGCATATGTTGGTATCAAAACCATGTAGGTAAGGCCTAAAGTACCTGGTACTTTGGTGAGCCATAGACTGCTTGAGAATTTGTACTATGAGGGGCTTTCTGCTCCATTTTCCAGCTGCCAGGTTGCATCAAAGGTGAATAAACGCATTTCTTTGCCAAGTAAGCAGCTCATGTCACTTGCTTAGAGATAGGGACAGTGGAGGAACGTTGCTACTGGGAACAGTGAGAAAAGCATGAAGGGAACATCTTTCTGCATCAGCTTGTGATTTGAAAAGAAAGAAAAAGCAACTGCAAGCTCATGGTGCTTTCTCTTTCAG
Seq C2 exon
GGAGCTTTGGAGCATGAAGAAAGCAAGACCCTTCGTTTTCAGCTTGAGCTTTCTCAGCTTAAAGCTGATTTTGAAAGGAAGCTGGCAGAAAAGGATGAAGAAATGGAAAATATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.905 A=NA C2=0.590
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.6=100),PF045827=Reo_sigmaC=FE(25.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.4=100),PF0003816=Filament=PD(10.0=76.9),PF045827=Reo_sigmaC=PD(11.0=46.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]