BtaINT0097249 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018399 | MYH15
Description
myosin, heavy chain 15 [Source:HGNC Symbol;Acc:HGNC:31073]
Coordinates
chr1:53542876-53547690:-
Coord C1 exon
chr1:53547487-53547690
Coord A exon
chr1:53543002-53547486
Coord C2 exon
chr1:53542876-53543001
Length
4485 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
AGGATGCTGCTTTTCTTTAGAAC
3' ss Score
5.92
Exon sequences
Seq C1 exon
GACCTGCAGGTGCAGGTGGATGACAGCACATGCATGAACAGCGAGCTGAAGGAGCAGGTGGCGGTGGCCGAGCGGCGCAATGCTCTTCTCCAGGCTGAAGTCGAGGAGCTAAGGTCCTTGCAGGAGCAGACAGAGCGCAGTCGCAGGCTGGCAGAGGAGGAGCTCCTGGAAGCCACGGAAAAAATCAATCTTTTCCATGCCCAG
Seq A exon
GTGGGACCCATAAACTCCCCATTAGCCTCATCAGCTGGTTGGAGGCAGAAGTTTCTACATAGTCAGCCTTGGTCTTGAACCATACACACTTGGCACATGGAGCCTTGGGGGTGTCCGGTGAGACAGGGAGAGCCTTTGGCAGCAGAGTGGTGGCCGTACCCTTCATTCATCCCCAAATGCATGGGCTCCCTACGGCTGCAGCAACATAGTCCACAAACTGAGGGGCTTAAAACAACAGAAATGTAACCTCTTACAGTTCTAAAGGCTAGAAGTCTGAAATCAAGGCGTTGGCAGGGTAGCACTCCCTCTGAATCTTGTAGAGGAATCCTTCCTTGCCTTTTCTCAGCTTCTGGTGGTTTAGTGGCAATCTTTGGTGTTCCTTAGCTTGTAGATCGGAGAAGGCAATGGCACCTCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTAGGCTGCAGTCCATGGGGTCGCTAAAAGTTGGACACAACTGAGTGACTTCATTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTTTTGCCTGAAGAATCCCAGGGACAGGGGAGCCTAGTGGGCTTCCATCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCAACTTAGCAGCAGCTTGTAGATGCGTCACTCCAATTCTCTGCCTTCACATGGCATTTTCTCTGTTTTAACATCATTTTCCTTCTGTATCTGTCATCTGTCATAAAAAATTTCCAAATTTTTATGAGGACATCAGTCAGATTAGGGCCCACCCTGGGTCTGGAGGATCTCCTGGAGGAGGGTATGGCAACCCACTCCAGTATTCTTGCCTGAAAAGTCCCAAGAAGAGGATCCTAGTAGGCTACAGTCCATGGGGTCACAAAGAGTTGGACATGACTGACCTCATTTTAACTTGATTGCCTCTGTAAGGAACCTGTTTCCAAGTAAGGTCACATTCTGAGAACTGGTGGTTAGGACTTCAACCTATGTTTCTTGTGGGGAGGGACACAATTTGACCCATAACATTAAGCCCTGTCAGAAGAATGAACTGTCAGGAAACTCACAGCTAGGATACTGGGGAGAGAGGAGGGGGGAACATTCACTAGTGTTCCAGAGTCATCTACCTGTTTATCCTGTTCCCTCTATGCCAATGTGTTCCCTGAGAATCCCAGGATTCAGGAAAAAAAAAAAAAGCTGCCTAAGAGCCAAGAGATGTCAAACAATTCTGAGTGGCTCCTGACAGTTATAATGAGTTGTCAGGACTCTGGCTTCTCATGGAAGATTATGTAAGTGACACAAAACAAGAATTCTTAGAATTTTTACTATTCTTGTGGAATCAGGAGAAACTGTAGTGGTTAGACAAATGCATATAGTAAATGGGTCATTCAATAAACATTTTTAATGCATCTACCATAACCTAGTGGAGAAGAAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCTCAGGGATGGGGGAGCCTGATGGGTTGCCATCTATGGGGTCACAAAAGAGTCAGACATGACTGAGGGACTAAACAACAATACCATGTACACCTGTCTAGGTTATGGTTGCTACTGCTGCTGCTAAGTCGCTTTAGTCATGTCCAACTCTGTGTGACCCCATGGACTGTAGCCCACCAGGCTCCTCTCTTTCCATGGGATTTTCCCAGTAAGAATACTGGAGTGGGTAGCCATTCTCCTCTTCAGGGGATCTTCCTGACCCAGGGATCAAATTTGGGTCTCCTGCATTGGCAGGTGGATTCTTAACCACTGAGCCACTGGGGAAGCCCAGTAGTACATAGCGTAGATAGATGAAGAATATCTCCATCATCCTACAAACATGAAGATCTAAGTAAACAAGCTGCAGTGCACTGCCAGGAGTACAGTGATGAAGCAAGGATAGCCCTATAGAAAACCTTCCCTGACGATCCTACACTTCAGGGAGATGCACAGTCTGCTTGATCTGAGCTGTGAAGGACACGTAAGAAGTCAGCCAAGTAGAGAGCAGAGTCAAGGGCAGACGCATGAGGAGAGGAGGGGATTTAGGATGTTAAGAAAAATTGATATATTTACTACAGCGTACGGTGGGGGTGGGGTGGGAGAAATCAGCAGAATTGATGCTCAGGGAGAGGCAGATAGACCCAGGTCACCAGGGACTTGATTTTGAAACTGATAAAGTTTGAAGTCTGCTGAAGAATTGTGAGTAACTGGGAGCAAAGTTATTAGATTTGCATCTTCAGAAGTTTACTCTGATGATTGTTGTGAAGGATGGATTCATGCAGCTAGGGGCAGATGTGCCATGCTCGGGGCTATTTAGAAACATCTGTGGGATCATTGTGGTTGCCATTGTGACTGGGAAGTGCCACTGACATTTAGTAGGCAAGTTCCAAAGATACTAATGCTCCTGCAAAATACAGGTAATTCGCTATCACAAAGAATTGCCCCTCCCGGAATGCCAACTGTAACTGAGAAACACTGGATAAAAGGAAATATAAGCCAAGGATGCACCAGCTGGAAGGCATTGCATTTAGTTTGTGCCTACAGTCTGACTTTGTGTCCATGTGCATGACAGGATCCTATTAGGATACCACGTGTATAAAACAGGCTATAGGCTGTGCATAATTCCCGACAGGCTAACTCACTTCAGTATTTTCTTTCTCTCTCAGGAAAGCTTAAATAAATAAAATGAGTAGAAGTGTTATAAAGTAGAATATTGAATTTTTAAAAAGTAAATCTGTAGTACTTAATAGCTATTGGTAACAAATCATTTGCCATACATGGTTATAGCTGATGATGCACCAGTAGGTCTCCATATGATGATAAAGCACTAGCCTAGAGAGAGATGAGGACATCAACCAGAGCAAAAGCAGACATAGAGAGGAGGAGATAGATCTGGAAAAAAAAAAGAAAATTAGGCCACAGAGACTTGATCTCCAGAGCAGAGTTTCTGAAACTTTATGTGTATAAAAGCAAATAACACAAAAATATACATTCTCAGGCTTCACCCCAGACCCACTGCAGAATCTCTGCTATAGGAGGAATCAAGCGAGTTTTCAGGTGATGCTGCCAGTCCAGAAACTACCCTTGGTGCAGTTCTGATCTAGGTGATCTATGGCTCACAAGGACTCCTCTCTCTTGTGAGGTCCTACCTTGGCCAAGTAGGACCCCTTGCAATTCTGGGAATACCAGCTATCTTCTGATTGATGTATAGTGACCATTTTATAGACTTCTAACCTAGACCAGACATATGAGGCCAAAGTTATCCCTGTCTGATTACATGGGTCCTTTTTCAAACATCTAGCTTGCCCTTCTGCACAGTACTCCCTCACCCTCTGCTTCCCAAAGAGAACCAATCATTTAGCTTGAAAATACTTTAACTATCAACTCCCTAGTGGATTTTAAGTGATTCTGTGTATAAATGAATCAAGATTTACACTTGTACCTTTCTTTACAAAGAGTTTCTATGGAGTTTTGTGCAGTGAGAATCCTGACAAACTCCAGGAAATGCCCTCACCCCCACCCCCCAGGCTACACCCCTGGCAGTAGGAGTCCCTGGGCACATAAAGCCTGTCTCTCAATGAGGACTGAGGATAGCAATCTTGACAAAGATGCTTCCCACCATTGAGGAAGCAGGACAGAACCTGTGAGGCTGTAATATCTCTCTTCCTGTTTCCAAGGTTTAATCTTGCCACTGAGAAAGGCACTAGCCAGAGGAAAAGTGAACAAACAGAAGAGAAATTAAAAATAGGAAGGCTATGCCTTTTAAATACATTCTCTCTGCTGAGCTTTCACACCCTCAGAAAAGCTGTGCTACAAACACAGACCAAAAAGGAGTTTCAGTTTCTAATGTCACAACCCAGGAAGGAAAGAATTAGGGCAGCACCAGCCAAAGAACACAAGTAACTCTCCCATGTGATGGAGCTTTCTAAGGGCTGGGGGGTGAGGCTCATCAGAATTACTTTTCCCACCCCTATATCAGTGCAGAATTGATAGAAACAGAGGTCGATGATGAGGAAGATTTTTCCCCCTGGAGCAGCATGCAGGAAGCTCATTTTTATTTCCTAGACCCCTGCTTTCCAGATGTCTGCTTTTGACCCTGACTTCTACTCTGGGACACTTGCTTCTTCCCACATCAAAGAGCAAGAGGCAGAAAAACATACTCCTCAATAAGGGGAAAACCAAACACGTGTTTGGGACTCGTAGGTTGTCTGGATCCACTGCTCCTTTCGGATTCAGGCTGCCGTCTCTCCAGTAGTGGACCACGCATAGATGAAATCCCATGCATTCAATCTAATGTGGTCTCTTGGCCCTGGAAGTGCTGCTTCACTGAGTATGGCTGACTAGAGGAAAATGACCTCCTGGCCAGAGCCCCTCACATTGCATGTCCTGAACAGACCAGCTTGCGTTTCACCACTGATCTCAACTTTCCTAATCAGGATGCTGCTTTTCTTTAG
Seq C2 exon
AACACGAGTCTCCTCAGCCAGAAGAAGAAACTGGAGGTGGATGTAGCCAGGATGCAGAAGGAAGCTGAGGAGGCGATGCAGGGCTGTCAAAATGCAGAAGAGAAGGCCAAGAAGGCAGCCACTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018399:ENSBTAT00000032372:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.279 A=NA C2=0.595
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100),PF0003816=Filament=PU(19.8=77.9)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development