DreINT0099899 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24948927-24949338:-
Coord C1 exon
chr11:24949135-24949338
Coord A exon
chr11:24949053-24949134
Coord C2 exon
chr11:24948927-24949052
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATG
5' ss Score
9.43
3' ss Seq
GATTTTCCACGCTTCTCCAGAAC
3' ss Score
8.04
Exon sequences
Seq C1 exon
GACCTTCAGATGGAGCTGGATGAGACAGTTCACCAGAATGAAGAACTGAAGGAGCAGTCTGCCGTGACTGAACGCAGGAACAACCTCTTGACTGCTGAGGTGGAAGAGCTGAGATGCCAGCTGGAGCAGAACGACCGAGCACGAAAACTGGCCGAGTTTGAGCTTCTGGAAACCACAGAGAGAGTCAACCTGCTGCATTCACAG
Seq A exon
GTAATGCCTAAAGACTGCTCAAAGGCAACTGATCTGAGCAGTCATGTCAAGTAACTCCTAACGATTTTCCACGCTTCTCCAG
Seq C2 exon
AACACTTCAATGCTCAATCAAAAGAAGAAGTTGGAGAACGATCTCGCCACACTTTCTAGTGAGGTGGACGATGCTGTGCAGGAATGTCGAAACGCTGAAGAGAAAGCCAAAAAAGCCATCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.662 A=NA C2=0.952
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100),PF0003816=Filament=FE(23.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(14.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGAGCTGAGATGCCAG
R:
ACAGCATCGTCCACCTCACTA
Band lengths:
182-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]