GgaINT0010730 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2944257-2944687:-
Coord C1 exon
chr20:2944484-2944687
Coord A exon
chr20:2944383-2944483
Coord C2 exon
chr20:2944257-2944382
Length
101 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CACTGCCTGTCTGCCTGCAGAAC
3' ss Score
10.92
Exon sequences
Seq C1 exon
GACCTGCAAATCGAGCTGGATGACACCCAGCGCCAGAATGATGATCTGAAGGAGCAGGCGGCCGCCCTGGAACGCCGCAACAACCTCCTGCTGGCGGAGGTGGAGGAGCTGCGGGCCGCCCTGGAGCAGGCTGAGAGGAGCAGGAAGCTGGCAGAGCAGGAGCTGCTGGAGGCCACTGAGAGGGTCAACCTGCTCCACTCGCAG
Seq A exon
GTGAGGGGCTGCAAACTGGCACCTGGGGCGCTGCTGGGACTGGTGAGCAAGGAGCCTGTTGGGCACGGCCAGTCCTTGTGGCACTGCCTGTCTGCCTGCAG
Seq C2 exon
AACACGGGCCTGATCAACCAAAAGAAGAAGCTGGAGACCGATATCTCCCAGCTGAGCAGCGAGGTGGAGGATGCTGTGCAGGAGTGCCGCAATGCAGAGGAGAAAGCCAAGAAGGCCATCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100),PF0003816=Filament=PU(19.2=73.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(15.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGAGCTGGATGACACCCA
R:
TGCTCAGCTGGGAGATATCGG
Band lengths:
254-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]