BtaINT0097379 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64910689-64911290:+
Coord C1 exon
chr13:64910689-64911085
Coord A exon
chr13:64911086-64911164
Coord C2 exon
chr13:64911165-64911290
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
3' ss Seq
AAAGCTCTGCTTCCCTGCAGAAC
3' ss Score
8.93
Exon sequences
Seq C1 exon
GCGCAACCACCAGCGGGCAGTGGAGTCCCTGCAGGCCTCCCTGGATGCGGAGACTCGGGCCCGCAATGAGGCACTGCGCCTCAAGAAGAAGATGGAGGGTGATCTCAATGACCTGGAGCTGCAGCTGGGCCACGCCACCCGCCAGGCCACAGAGGCGCAGGCCGCCACGCGGCTGCTGCAGGCCCAGCTCAAGGAGGAGCAGGCGGGGCGGGACGAGGAGCAGCGGCTGGCGGCAGAGCTCCGCGAGCAGGCACAGGCCCTGGAGCGGCGGGCCGCCCTGCTGGCCGCGGAGCTGGAAGAGCTGCGGGCAGCCCTGGAGCAGGGTGAGCGCAGCCGGCGGCTGGCGGAGCAAGAGCTGCTGGAAGCCACGGAGCGTCTCAACCTCCTGCATTCACAG
Seq A exon
GTGGGCACTGGGGGTTGTCACCAGAGCATGCGGGGCAGGGGCCTGCAAGGCCCAACTCTAAAGCTCTGCTTCCCTGCAG
Seq C2 exon
AACACAGGTCTCCTGAACCAGAAGAAGAAGCTGGAGGTGGATTTGGCCCAGCTGAGTGGGGAGGTGGAGGAGGCCGCCCAGGAAAGGCGGGAAGCCGAGGAGAAGGCCAAAAAGGCCATCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.692 A=NA C2=0.667
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(15.4=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAGCTGCGGGCAG
R:
CCTCCACCTCCCCACTCAG
Band lengths:
174-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development