GgaINT0010730 @ galGal3

Intron Retention

Gene

ENSGALG00000003157 | MYH7B

Description

NA

Coordinates

chr20:2586162-2586592:-

Coord C1 exon

chr20:2586389-2586592

Coord A exon

chr20:2586288-2586388

Coord C2 exon

chr20:2586162-2586287

Length

101 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGG

5' ss Score

10.07

3' ss Seq

CACTGCCTGTCTGCCTGCAGAAC

3' ss Score

10.92

Exon sequences

Seq C1 exon

GACCTGCAAATCGAGCTGGATGACACCCAGCGCCAGAATGATGATCTGAAGGAGCAGGCGGCCGCCCTGGAACGCCGCAACAACCTCCTGCTGGCGGAGGTGGAGGAGCTGCGGGCCGCCCTGGAGCAGGCTGAGAGGAGCAGGAAGCTGGCAGAGCAGGAGCTGCTGGAGGCCACTGAGAGGGTCAACCTGCTCCACTCGCAG

Seq A exon

GTGAGGGGCTGCAAACTGGCACCTGGGGCGCTGCTGGGACTGGTGAGCAAGGAGCCTGTTGGGCACGGCCAGTCCTTGTGGCACTGCCTGTCTGCCTGCAG

Seq C2 exon

AACACGGGCCTGATCAACCAAAAGAAGAAGCTGGAGACCGATATCTCCCAGCTGAGCAGCGAGGTGGAGGATGCTGTGCAGGAGTGCCGCAATGCAGAGGAGAAAGCCAAGAAGGCCATCACGGAT

VastDB Features

Vast-tools module Information

Secondary ID

ENSGALG00000003157:ENSGALT00000004997:40

Average complexity

IR

Mappability confidence:

NA

Protein Impact

ORF disruption upon sequence inclusion

No structure available

Features

Disorder rate (Iupred):

C1=0.496 A=NA C2=0.720

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=PU(20.9=98.2),PF0003816=Filament=PU(19.6=89.3),PF041569=IncA=PU(41.9=96.4),PF0017016=bZIP_1=PU(52.0=46.4),PF045827=Reo_sigmaC=PU(20.0=50.0),PF129622=DUF3851=PU(11.7=12.5)

A:

NA

C2:

PF0157614=Myosin_tail_1=FE(15.6=100),PF0003816=Filament=FE(16.1=100),PF041569=IncA=FE(31.8=100),PF0017016=bZIP_1=PD(44.0=52.4),PF045827=Reo_sigmaC=FE(29.3=100),PF129622=DUF3851=FE(68.3=100)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSGALP00000004988