RnoINT0096452 @ rn6
Intron Retention
Gene
ENSRNOG00000061038 | Myh15
Description
myosin, heavy chain 15 [Source:RGD Symbol;Acc:1565858]
Coordinates
chr11:54222684-54226640:-
Coord C1 exon
chr11:54226605-54226640
Coord A exon
chr11:54222810-54226604
Coord C2 exon
chr11:54222684-54222809
Length
3795 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
GGAATGCTGTCCTTCCTTAGAAC
3' ss Score
6.42
Exon sequences
Seq C1 exon
GAAGCCACAGAAAGAATCAGTCTTTTCCACACCCAG
Seq A exon
GTGAGACCCTTGAATTCTCTCTATTAGCAAAGTCAGCTGGTTGAAAGACGTAGTTGCCAACTCTGAGTCAGCTAGGATAGGTATGATGGCCATGTCGAGTCTTAGTTGTGACAAGAGAGGCACAGAAAGCTATGCAACCAAGGAGCTGGTCACACCTTTCATTCCAAGCATTAGCTTCCCAGAGCAGGTGTAACAAAATGCCATCAACTGATGTCTTTCAACAGATTTATTTTTTCATAGACCTGGGTGCTAGTCATCAAAAATCAAGATATTTTAAGAGCCATGCTCCCTCTGAAACCCAGAGATGAATCAGCTCATCCTGGCTTCTGAGGGGTTTCCTGACACTCTTTCTATCGATGCCCTGTTTCAATTCCTTGTTCTCACATGGTATTCTGCTTGCCTCTTTTCTCTTGTGTCTATGTTTGAATTCATCCTTTATATACAGATACATCATATGGAATTATGGCCCATCTTAATGATCCAATATCAACTTAACTCATTTAAAGCTTGATTAGCTCATTTCTGAATAGGGTGATACTTTTCAAAACTATGACTAAGGAGTTCAATATAAGCTTTTGTGGCATGGTGAGAGTATGGTGCAATTGTCACACTAAGTTTCTGTATGAAGATTGGACTGTCAGGGCATCCTCAGCCAGGATGGCGGAAAACAGATGAACATTTCTCATTGGTCTAAAAGTATTTGCTGGCCCCCTTATTCCCTTGTCTCTCTCAGAGACTTGCTTCCCACCATCTAGGAATCTCCATTATTCCAAAGGGTTTCTGTCAATATTCTGGTTTCTCCTATAAACTTATGTAAGTGAGAATTAGTGGGATTCCTTGATTATTCCTTGATCACTCAATCACTTAATCTCTTGGGCAATAGCAGGGACAAATGCTGAGAGTAACTGTGTCAAACACTGAGCATTTTAGGGCACATGCTATAAGTTAGATAAGTATTACTCAATATGATAAATAGTGTCCTTACTGTCCCCAACAAGTAAAGACAAATGTAAATAACCATACTGTACTATTATGAGCACCATATGGAATACAGGACACTGCAGAATGCCCTCAGTGGTCCTAGATAATGTTGGGCAGGCACGAGAGTTTTCTCCCTAGTCATGAAAGATGTGGGAGAGAGAAATGGTGGTAGAAACAAAATTTAAGAAAGTGGATGGAAACAGGGACGCTGGTGACTGTTGAGAAGGATAGATTAAAGCAGTTGAGGACAGACTGTCGCTCTGGGAAGTGCTGAAAATATCTTGGGTCATTTTGGCTGCATTTGACTCAGAAGTGTCACTTGCATTTTGTGGGCAGGGTCTAGAGACTTCCTTTGAAATACCATATGATCCCATATCACAGAAGTATCATCTGATTCCCATATCTCGGAATCACTGTTCCCAGAACATCAGTAGTGCCCTCAAGGGGTTACAGTTAGTCCATGTCTACAGTAGGTTTATGCAATGACATCATTTCTCTGGGTGCCATGGTTCAAGAACAAATATGCTGCAGTGTATGCATAATTATTAGTAGGTCAACTAATTTCAACACTCATCTTTGAGAGTTTTTGTCAGTGGTAGAGCACTTGACTTGAGTATATGAAGCCTTGAGTTCAACCCAGCTGCAATAGAGAAAACAAAAACAAAAACAAAACAAAACCCAGCAAACAAATCACATTTTTTTCTCCCTTAAGAAGGTTTAGCTCAATAATAAAATGTGGCATATTGGATCTTTTCTTTGAAACTATATTATCCATTGTCTGCCATGCATAGTAACTACTGGTGACAAGTCATTAGATGTAAATGTCATAACTAATAATGTACTGTGTTCCATTGTGAAAAAGGATAGAAGGAGGTAGAAGAGAAGGAGAGAAAAGGGGGACAGGAAGAAGAGAACACAAAGGCAACAGCAGAATATGGTTTTGAGGGAGGGAAAATGAAGCAATGTACTGACGTATATTACTTACTTTTTGTAACCCTGACATAAACAGAAGACACCTAGAAAGAAAATGTCAGTTAAGAAACCGCTTCCATACGATTGGCCTGTAGACTGTGGGGCATTTTCTTCATTAATGATTGCTGTGATTGGGGCCATCCCACCTTAGGTCCTGGGCAGGTGATCCTGGGTTATATAAAACAGCAGGCTGCACAAAGCCATAGCCAGTAAGCAGCACTCAGCTGTGGCCTCTGCATCAGTTCCTGCCTCTTGGTTTCCTGGACTTTCCTTGAAGACAGTATAAATTGAAATAAAATCTCTCCTCCCCAAGATGGCATTGGTCAGTGTTTTATCACAGCAACAGAGAAGTCAATTAGGACTCTTAGGTAACAGGGCCTTGGTCTATAGGGCAATTCCTGAAACTTCAAAGAGTCATTAGCATGAGTACCAACACTCAAATCTCACCGATCTATGAGGTCCACAGCTCTCCAGCAGATAGAGGCTCAACAAAATCTCAGGTGATGCCCCTGGTCGTCCAGCATTAACCCAGGAGGTGTGGCACTCCTTTTAAAACTCCCTTGCTTAGAAACATACAGCTAAGTAAAACTCACACAAAGAGTCCTCTCCACATTATACCTTAAACTTCTTCCCTCTGAAAACGGAAGCTGGGGTGGAATCAAATCACAATCAGATCAGTGTGTGGACTTGTACTGCCCTTCACACTGAGAGAACTCCTGTGGAATTATATGCAGTGGGCACCCATAACACAATCCAGGAACATACACTTCATTCCCCCGGACCACACTGAAAGCAATGGCAATCCTGCAGAGCCCAGGCCCTGCCCCTCCATAGGATGGAGAGCGGCTTGCTTGATGGAGCTGGTACAGGGCAGGTAGAACCTGTGAGGCCTGGATGCCTTCTTTCTCTGCTTGAGGCTTAATCTGCCCCGAGAAAGGCTGTAAGGGAGGGAAGGGAAAGGTGGTGTGAAAGGATGAACTGAAGAGAGAAATGAAAAGCCGGCAGCCCGTGCTTTTTGCGCACCCTCTTTGTGCTAAGGTTTCCCATGCTCACAAAAGCTGTACTTCAAACACAGGGCAGATGCGGTAGACGGGAGCTTGGCCTCCAGCGCCACAATCAGGAAGGAACTGGGGCAGCGTGGCTGTGGAACACAAAGGCCTTCCTTTAATAGAGTTCTAGGGACTGGGTCTGAGCTTTCTGCAATCTGCTTTCCTACCGCCATCACCCCATTTTCCTCATCTCCTTCCCCCTCATCCCCTTCCCTCTCCGTGGCTGTGGAACACAAAGGCCTTCCTTTAATAGAGTTCTAGGGACTGGGTCTGAGCTTTCTGCAATCTGCTTTCCTACCGCCATCACCCCATTTTCCTCATCTCCTTCCCCCTCATCCCCTTCCCTCTCCGGCCTTCCCCTTCTCTCCCTCCTCCTCCGCCTCTTCACTGAAGAATAAGAAGGACGGAAGTGGGAAAGAGGGAAATTGGTTTTCCTCCTGTAGCAGTGTGCTGGAAACCTCCAGGTGGCTGCAGGTGACTGTGACTTCTGCTCGAGGACATTTGTTTCTATCACACTGTAAAGGCAGAAAAACATTCCTCAATAAGTTAGAAACTAAATCCATGCTCTCGCTCTGCAATATTCCAAATCCTCCTTTCTGAGTCAGGCATCCATCTCTTTCCTCCCGAACCTCTAAATAAAACCCCCTCATTTGATCTGCCTTTTGTGACCAAGCCACCACTCAAGCTGGAGATCTTGCTTAACTGCCTAAGGCTGACTATGCTCAGTACCCAGAGCTCTTGCCTGTACTTCGCTGGCCTCAGCTTACCTAACCGGAATGCTGTCCTTCCTTAG
Seq C2 exon
AACGCAAGCCTCCTCAGCCAGAAGAAGAAACTGGAGGCTGATGTTGCTCAGGCGCAGAAGGAAGCTGGGGAGATGCTTCAGGCTTGTCAGAAGGCAGAAGAAAAGGCCAAGAAGACAGCTGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061038:ENSRNOT00000090307:43
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.810
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(1.3=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]