GgaINT0119205 @ galGal3
Intron Retention
Gene
ENSGALG00000015358 | Q91377_CHICK
Description
NA
Coordinates
chr1:90781633-90782841:-
Coord C1 exon
chr1:90782638-90782841
Coord A exon
chr1:90781759-90782637
Coord C2 exon
chr1:90781633-90781758
Length
879 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGC
5' ss Score
5.52
3' ss Seq
GTTGGAAAATGTAATGAAAGAAC
3' ss Score
-6.53
Exon sequences
Seq C1 exon
GAGCTCCAGGTGCAGCTGGATGACTTGGGACACCTGAATGAAGACTTGAAGGAGCAGCTGGCAGTCTCTGACAGGAGGAACAACCTTCTCCAGTCAGAGCTGGATGAGCTGAGGGCTTTGCTGGACCAGACTGAACGGGCGAGGAAGCTGGCTGAGCATGAGCTACTGGAAGCCACCGAACGTGTGAACCTGCTGCATACTCAG
Seq A exon
GTTGGCTTTTTCTGGGTTAAACTGTGCTTCACCTGTTAAACACTGACGCTGTTCATCCATGGGCATCAAAAGACAAGATGCTCCCTGTATGCCTTCTGGTTAGAAAATGAAGGAGAGGAAATAAGCTGCTCTGCAGATGTACTCCCTCCTACCTGCTAGGGTAGCTGGAACTGATGGCTCAGCCAACTGCTTTAAGCAGTTCCCAGAAAATATGGATGGGTGATTACAAGAGCAAGTTGTAGTTCTTTCCTTCTCTAAGTGCTATAAAACCACAGCTTCCAGCTTTCACTTGGAAGCGGCTGGAATGGAGAAGCAGACATGGTGTTTTTGCTGCTGGTACTCAGCAAATCAAACTGCAGTGTCTGGGTGTAGGCCTGCTGTGCAGTGCAGCAAAATGTGCTCAGCTACACCACATGGCTTCATTAAGAGAGGCCTTTGGACTTTAAAGAATCATGTAAGGACACCTCTTGACTCAGCAGCATTTTTGCTGCAAAATCCAAGCTTCTCTTCACCAAATATTGAATACTCAGAAGGGAGAATGAGTTTTTCTACTTTGATGACATGGGGCTTTTGTTCTAAGCACTCATTAACTAACAAGTAATGGATCATTGGCTTTCTGAGTTGAACTGCCTTATCCATTCTTCTATTTCATTGTCTAGCTTATTTTATCTGAATCAAAATCTGAATGTTTACAGCTATGTGGGTACTCTTCCTAGGCCTGAAGCTAGATAGGTAGTAAAAGCCCTTAACACACTGCTGGGTCTCCCCAAATACTGCCAAAATAATTAATGGTGTGCTATGGTATTTAAAGAAGTTAGGTCTCCAATAATCACTTTTCCTCCTTTTCCACTTCTCCTTTGTTGGAAAATGTAATGAAAG
Seq C2 exon
AACACAAGCCTGATCAATCAGAAGAAGAAACTGGAGGGTGACATATCCCAGATGCAGAATGAAGTGGAGGAATCAATCCAGGAGTGCCGGAACGCAGAGGAAAAAGCCAAAAAAGCGATCACAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015358:ENSGALT00000036887:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.952
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(7.8=100),PF0003816=Filament=PU(18.7=73.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(15.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTGCAGCTGGATGACTTG
R:
TTTTGGCTTTTTCCTCTGCGT
Band lengths:
310-1189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]