BtaINT0097288 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037794 | MYH4
Description
myosin, heavy chain 4, skeletal muscle [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr19:30091416-30091928:-
Coord C1 exon
chr19:30091792-30091928
Coord A exon
chr19:30091672-30091791
Coord C2 exon
chr19:30091416-30091671
Length
120 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TGCCTCTTTTCTTCCAACAGAGA
3' ss Score
10.4
Exon sequences
Seq C1 exon
GTTTTCTTTAAGGCTGGCCTGCTGGGAATTCTAGAGGAGATGCGAGATGAAAAGCTGGCTCAGCTCATCACACGCACTCAGGCCATTTGCAGAGGGTTCCTGATGAGAGTGGAGTTCAGGAAGATGATGGAGAGAAG
Seq A exon
GTGAGGAAACAAGTACAAGTCTCACTTCTCCACATTTTCATAGCTTAATCCAGTCATTATTTTTGTTGAGAGATGTTAACTTTCCACATTCTTCTTTACTTGCCTCTTTTCTTCCAACAG
Seq C2 exon
AGAATCTATCTTCTGCATCCAGTACAATGTCCGTGCTTTCATGAACGTCAAGCACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAGCCCCTCCTCAAGAGTGCAGAGACAGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAGAAGACCAAAGAAGAGCTGGCTAAGTCAGAGGCAAAAAGGAAAGAACTTGAAGAGAAAATGGTGACTCTGATGCAAGAGAAAAATGACTTACAACTCCAAGTTCAATCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037794:ENSBTAT00000061014:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTGCTGGGAATTCTAGA
R:
TGGCCATCTCCTTCTCTGTCT
Band lengths:
251-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development