HsaINT1024109 @ hg38
Intron Retention
Gene
ENSG00000264424 | MYH4
Description
myosin heavy chain 4 [Source:HGNC Symbol;Acc:HGNC:7574]
Coordinates
chr17:10454555-10455077:-
Coord C1 exon
chr17:10454941-10455077
Coord A exon
chr17:10454811-10454940
Coord C2 exon
chr17:10454555-10454810
Length
130 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
CTTTTTTTCTTTTCCTACAGAGA
3' ss Score
11.51
Exon sequences
Seq C1 exon
GTTTTCTTCAAAGCTGGCCTGCTGGGAACTCTAGAGGAAATGCGAGATGAAAAGCTAGCTCAACTCATCACGCGCACTCAAGCCATATGCAGAGGGTTCCTGATGAGAGTGGAGTTCAGAAAGATGATGGAGAGGAG
Seq A exon
GTGAGAGCCCACACACAAGTCTTCCTGCTCCACACTTTCATAAATGAATCCACTGCAGTCATTACTTTTGTTGAGTGATGATCACTTTCCACATTATTCTCCATTTGCATCTTTTTTTCTTTTCCTACAG
Seq C2 exon
AGAGTCCATCTTCTGCATTCAGTACAACATCCGTGCTTTCATGAATGTGAAGCACTGGCCCTGGATGAAGCTGTATTTCAAGATCAAGCCCCTCCTCAAGAGTGCAGAGACAGAGAAGGAGATGGCCAACATGAAGGAAGAATTTGAGAAAACCAAAGAAGAGCTGGCTAAGACAGAGGCAAAAAGGAAAGAACTAGAAGAAAAGATGGTGACGCTAATGCAAGAGAAAAATGACTTACAACTCCAAGTTCAAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000264424:ENST00000255381:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.233
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCACTCAAGCCATATGCAGA
R:
TTTGCCTCTGTCTTAGCCAGC
Band lengths:
248-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains