GgaINT0129360 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1P3X4]
Coordinates
chr18:389790-390284:-
Coord C1 exon
chr18:390148-390284
Coord A exon
chr18:390046-390147
Coord C2 exon
chr18:389790-390045
Length
102 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
ATGTTTTAATTATGCTTCAGAGA
3' ss Score
6.25
Exon sequences
Seq C1 exon
GTGTTCTTCAAAGCTGGGCTGCTGGGACTTCTGGAGGAGATGAGGGATGAGAAGCTAGCACAGCTCATCACTCGCACACAGGCCAGGTGCAGGGGCTTCCTGATGAGAGTGGAGTACCGCAGAATGGTGGAGAGGAG
Seq A exon
GTAGGTGTTCCCCATCTTCACTTAAGGTCACTGTATTTGAGTAGAAGTGTTACCGCTCATCACACTCAAAAATATTCAGTGTATGTTTTAATTATGCTTCAG
Seq C2 exon
AGAATCCATCTTCTGCATCCAGTACAATATTCGTTCATTCATGAATGTCAAGCACTGGCCCTGGATGAAGCTGTTCTTTAAGATCAAGCCGTTGCTGAAGAGCGCAGAGTCTGAGAAGGAAATGGCCAACATGAAAGGGGAGTTTGAGAAGACCAAGGAAGAACTTGCAAAGTCTGAGGCAAAGAGGAAAGAGTTGGAGGAGAAAATGGTGTCCCTGCTGCAGGAGAAAAATGACTTGCAGCTCCAAGTGCAGGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028102:ENSGALT00000001420:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.163
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=PD(0.4=6.5)
A:
NA
C2:
PF0157614=Myosin_tail_1=PU(26.9=61.6),PF135141=AAA_27=PU(7.0=60.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAGTACCGCAGAATGGTG
R:
GCAGCAGGGACACCATTTTCT
Band lengths:
250-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]