BtaINT0097302 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21325414-21326011:+
Coord C1 exon
chr10:21325414-21325614
Coord A exon
chr10:21325615-21325867
Coord C2 exon
chr10:21325868-21326011
Length
253 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTGTCCGTGGACTGTTGCAGACA
3' ss Score
6.2
Exon sequences
Seq C1 exon
ATGGTGGACGCGGAGATGGCCGCGTTTGGGGAGGCCGCCCCCTACCTGCGCAAGTCAGAGAAGGAGCGGCTGGAAGCCCAGACCAGGCCTTTCGACCTCAAGAAGGACGTCTTTGTGCCTGATGACAAAGAGGAGTTTGTCAAGGCCACAATTTTGTCTCGAGAGGGTGGCAAAGTCACCGCCGAGACAGAACATGGCAAG
Seq A exon
GTGGGTGGCGGGGCCAGCGTGAGAGGCCACCCTGGATGCCCCCCCACGCCTGGGGTGCCTGGCGGGTGCCACCAGGATGTACCCCACGTAGTCCTGTTTCTCCCTTCCTCTGGGTAGGGATGTACTGTCTCCAAATAGCCCTTCTCATCCCCAACATCCCGTCTATCTTCTCTGGGACCCTGGATTCTTTTCTCATGAACACGGTTCTCCTATAACCTGCCTAACTCCCATCCCTGTCCGTGGACTGTTGCAG
Seq C2 exon
ACAGTGACCGTGAAGGAGGACCAGGTGTTGCAGCAAAACCCACCCAAGTTCGACAAGATCGAGGACATGGCCATGCTGACCTTCCTGCACGAGCCTGCAGTGCTCTACAACCTCAAGGAGCGCTATGCCTCCTGGATGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(78.6=49.3)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCAAGTCAGAGAAGGAG
R:
GATCATCCAGGAGGCATAGCG
Band lengths:
297-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development