RnoINT0096525 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33655463-33656089:-
Coord C1 exon
chr15:33655881-33656089
Coord A exon
chr15:33655607-33655880
Coord C2 exon
chr15:33655463-33655606
Length
274 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
CCTGCATGGGCTGTTTACAGACG
3' ss Score
5.27
Exon sequences
Seq C1 exon
GCTCAGTCATGGCGGATGCAGAGATGGCTGCATTTGGGGCCGCAGCCCCCTTCCTGCGAAAATCTGAGAAGGAGCGGCTGGAGGCGCAGACCAGGCCCTTTGACCTCAAGAAAGATGTTTTTGTGCCTGATGACAAAGAAGAGTTTGTCAAGGCCAAGATCGTGTCTCGAGAGGGTGGCAAAGTCACCGCTGAGACAGAGAATGGCAAG
Seq A exon
GTAGGTGTGGGTACTGGTGTGGAAGGCTACGTAAGAGAGCCCCACACCCGGGGTGCCCAGAGAGGGGACATGCTTGCACACCTGAGGGCCCCCAAGCTTTCGGTCCTTTGGGTAGGATGGGGGTCCAAATTCTCCTTACTCCCAACATCTAATCCCAGTCCCGTCTCAGCTATATACACCAGCTCCTCTACTCCATACCTTGCCTTACTGCCTTCATGCTGAGAAAACAGGGCAGACACGGGTTGACATGAGGGCCTGCATGGGCTGTTTACAG
Seq C2 exon
ACGGTGACTGTGAAGGAGGACCAGGTGATGCAGCAGAACCCTCCCAAGTTCGACAAGATCGAGGACATGGCCATGCTGACCTTCCTGCACGAGCCGGCTGTGCTCTACAATCTCAAGGAGCGCTACGCTTCCTGGATGATCTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(78.6=49.3)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGATGGCTGCATTTGGGG
R:
GAGATTGTAGAGCACAGCCGG
Band lengths:
305-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]