MmuINT0103597 @ mm9
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:55611077-55611718:-
Coord C1 exon
chr14:55611510-55611718
Coord A exon
chr14:55611221-55611509
Coord C2 exon
chr14:55611077-55611220
Length
289 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
GCCTCTGTGGGCTGTTCCAGACG
3' ss Score
6.91
Exon sequences
Seq C1 exon
GCTCAGCCATGGCGGATGCAGAGATGGCTGCATTTGGGGCTGCAGCCCCCTTCCTGCGGAAGTCTGAGAAGGAGAGGCTGGAGGCACAGACCAGGCCCTTTGACCTCAAGAAAGATGTTTTTGTGCCCGATGACAAAGAAGAGTTTGTCAAGGCCAAGATCGTGTCCCGAGAGGGTGGCAAAGTCACTGCTGAGACGGAGAATGGCAAG
Seq A exon
GTAGGTGTCGGGACTGGTGTGGGGAGGCCACTCAAGAGAGCCCCATACCTAGGGTGCCCAGAGAGGGGACAGGCGTGCACACCTGAGGACCCCCAAGCTTCCCGTCCTTTGGGTAGGGTGGGGGTCCAAACTCTCCCAAAAGTCTCCTTACTCCCAACATCTAACTCCAGTCTCTCCTCAGCTATACACCCCCCCCCTGCCCCCAACTCCATACCTTGCCGTGCTGCCCTCATGCCGATAGAGCAGGGCAGACACAGGTTGACATGAGGGCCTCTGTGGGCTGTTCCAG
Seq C2 exon
ACGGTGACTGTGAAGGAGGACCAGGTGATGCAGCAGAACCCACCCAAGTTCGACAAGATCGAGGACATGGCCATGCTGACCTTCCTGCATGAGCCGGCTGTGCTGTACAACCTCAAGGAGCGCTACGCTTCCTGGATGATCTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093-Myh7:NM_080728:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.229
Domain overlap (PFAM):
C1:
PF0273614=Myosin_N=PU(78.6=49.3)
A:
NA
C2:
PF0273614=Myosin_N=PD(16.7=14.6),PF0006316=Myosin_head=PU(4.1=58.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCGGATGCAGAGATGG
R:
CTCATGCAGGAAGGTCAGCAT
Band lengths:
295-584
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: