BtaINT0097320 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21344831-21345624:+
Coord C1 exon
chr10:21344831-21344965
Coord A exon
chr10:21344966-21345492
Coord C2 exon
chr10:21345493-21345624
Length
527 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACTGTGCTTCCTTCCCAAAGGGC
3' ss Score
9.39
Exon sequences
Seq C1 exon
GAGGAACAGGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGACGAGGCAGAGGAACGGGCGGACATCGCTGAATCCCAGGTCAACAAGCTGCGGGCCAAGAGCCGTGACATCGGCACCAAG
Seq A exon
GTGGGTTCCCCCCACGGCAGCAACCCCTCAGCCCCTCAGACATAGCCCCTCACACCAGGATTCTTCCCCTTCACATACTACTGCACCCGAACCCCACAGCCCCAGAGGTGAGGTAACTCAGTCCTCCATGATTTCTAAGGTTCTTCCCGCTCTCACTTTCAATGATTTTGTGATTCCCAGCCCTATGGTGGTCAGCAGAAACCGTAATTGACACACATTTAGTGTGTCCCATCTTCCCCCAACTGCTATTTCCACTTCTCTTCCACCTGCTTTAGGCCTTCAGTCTTGTAACTCCCACCTAAGATGTACATCCCAGAGGACCTTGTCCTTGTTGAGGCAGCATCCCTCCATCTAAGCCCAGGGCCCTTCCCTCCAGAGCCCTCCCCTCCACACTGACCCCTAGGACCCATGTCCCACCACCTCGGGGCCTCCCTCAGGCCACACTGTGGTACTCCCCACCTCAGTGCCCATCCCTGCCCAACACCCACCTCTCTGGAGCTAGTGTGGACTGTGCTTCCTTCCCAAAG
Seq C2 exon
GGCTTGAATGAGGAGTAGCCGTGCCACATCTTGGTCTGCCCCATCCTGAGGGTGCAACTGAAGCTCCCAGTCCCGGAGCCTGGAGAGCTGCCCCTTTGGAAGAAGCAGAATAAAGCAATTTTCCTTGAAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:38
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAACAGGCCAACACCAAC
R:
TCAAGGAAAATTGCTTTATTCTGCT
Band lengths:
263-790
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development