MmuINT0103598 @ mm9
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:55589525-55590348:-
Coord C1 exon
chr14:55590214-55590348
Coord A exon
chr14:55589648-55590213
Coord C2 exon
chr14:55589525-55589647
Length
566 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
CTTTGTTTTTATTTCAAAAGGGC
3' ss Score
7.28
Exon sequences
Seq C1 exon
GAGGAGCAGGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGATGAGGCGGAGGAGAGGGCGGACATCGCCGAGTCCCAGGTCAACAAGCTGCGGGCCAAGAGCCGGGACATTGGTGCCAAG
Seq A exon
GTGGGTTTCTCCCCTGGACCTCACTTGTCACCTCCCACAGGAGGCACAGCTCCTCTGTCCCCTCAGACAACGTTGTTTCATTTAGTCCCTAGCTGAGCCCCAAAGCCCCAAAGGCTAAGGTGACTGAGTTCCCAGTAACATCTTAGGCTCTCTGTGACCTCATTTGCAGTGATTCTGGGAACCCCAGGTCAAGAGGAGTCAAAAACCCTATATGGCCCCGATTTATACACACCCCTTAGATCCAGATCCCCCCAGCTACCGTGTCTATTTCCCACTTCATTCCGGCTCCTATCCTTGAATCTCAAGCATGTAAAGGCTATCCCAAGGTCTCCACTGATCTCACAGAGGCAGCTTCCCTCCCTCCTAGTTAAGCGCCCTTATCTCCAGAACGTTCTCCTTCCACACCGACCCCTGAAAGCATATCCCTGCCAACAGAGGGGATCCTGCAAGGTCACACAAGAGTCTCCACCCACCAGGTGCCCTAGTCTCAATTTCAGTTTCCATGCCTTGTTCTCACAATGCTGGCCTCCCCAGAGCTAATTTGGACTTTGTTTTTATTTCAAAAG
Seq C2 exon
GGCCTGAATGAGGAGTAGCTCTTGTGCTACCCAGCTCCAAGGGTGCCCGTGAAGCCCTCAGACCTGGAGCCTTTGCAACAGCCCTTTAGGTGGAAGCAGAATAAAGCAATTTTCCTTAAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093-Myh7:NM_080728:40
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCAGGCCAACACCAACC
R:
GGCTTTAAGGAAAATTGCTTTATTCT
Band lengths:
255-821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: