HsaINT0107868 @ hg19
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin, heavy chain 7, cardiac muscle, beta [Source:HGNC Symbol;Acc:7577]
Coordinates
chr14:23881947-23883102:-
Coord C1 exon
chr14:23882968-23883102
Coord A exon
chr14:23882081-23882967
Coord C2 exon
chr14:23881947-23882080
Length
887 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
ACTTTGTTTCCTTTCAAAAGGGC
3' ss Score
7.99
Exon sequences
Seq C1 exon
GAGGAGCAAGCCAACACCAACCTGTCCAAGTTCCGCAAGGTGCAGCACGAGCTGGATGAGGCAGAGGAGCGGGCGGACATCGCCGAGTCCCAGGTCAACAAGCTGCGGGCCAAGAGCCGTGACATTGGCACGAAG
Seq A exon
GTGGGTCCCTCTTTTGGGCTTTGCTAGTCACCCCCACAGCAGGCATACCCAGACAGAGCACCCTCAAACCCGGGATGCTTCCTTTTCATTTATTCCACACACTTGAGCCACATGGCCCCAGAGGCCAAGGTAATGCAGTTCTCTGTGATTTCAAGGATTCTTCCAGCTCTAACTTTTTTTTTTTTTTTTTTTGAGACGGTGTCTCACTCTGCCGCCCAGGCTGGAGTGCAGTGGCACAATCTCAGCTCACTGCAACCTCTGCCTCCTGGGTTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTATAGGCATGTGCTACCATGTCTAGCTAATTTTTATATTTTAGTAGAGATGCGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTTGTGATCCACTCGCCTCAGCCTCCCAAAGTACGGGATTACAGGCGTGAGCCACCACTCCCAGCTCAGCTCTAAGTTTCAGTGGTTCTGGGAATTTCAGCCTTAGGGAGGGGTGCCACCCTAGAAGACCCTAATTTATATACAACCAGTATATCCCAGTTTCCCCCCAACTGCTAGTTTCCAGTTCCCTTCCACCTAATTTTGTCCTGCAATCTTGTAACTCAAACCTAAAATGGACATCCCAGAGAACCCGGGCCTGGCTTTGTTCTCGCCCAGGCAACTTCCCTCTGACCAACCCCAGAACCCTACCCTCCAGAACTTGCCCCCCGAACATCGATCCCTGGAAACACATGTGCTGCTGCCACAGGGGCTTCCACCTGCCCACAAAGCAGGCCCCCCACCATCAGACCCCTCTCACCTTTGTTCCCATGCCCTGTCCCTGCCCAATACCATCTCTCCAAGGACTGATTGGACTTTGTTTCCTTTCAAAAG
Seq C2 exon
GGCTTGAATGAGGAGTAGCTTTGCCACATCTTGATCTGCTCAGCCCTGGAGGTGCCAGCAAAGCCCCATGCTGGAGCCTGTGTAACAGCTCCTTGGGAGGAAGCAGAATAAAGCAATTTTCCTTGAAGCCGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054-MYH7:NM_000257:39
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.933 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=88.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGCCAACACCAACCTGTCC
R:
TCTCGGCTTCAAGGAAAATTGCT
Band lengths:
263-1150
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)