GgaINT0010735 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2941703-2943211:-
Coord C1 exon
chr20:2943074-2943211
Coord A exon
chr20:2942997-2943073
Coord C2 exon
chr20:2941703-2942996
Length
77 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
ACGCCTTTCTCTTTCACCAGCAC
3' ss Score
8.32
Exon sequences
Seq C1 exon
GAGCAGCAGGCCAACTCCAACCTGGTGAAGTACCGCAAGGTGCAGCACGAGCTGGACGACGCTGAGGAACGAGCTGACATTGCTGAGACGCAGGTCAACAAGCTGCGTGCCCGCACCAAGGAGGTCATCACCTTCAAG
Seq A exon
GTAAGGCCCAGCCCTGCTGCCCCCCCTCTGCAGCCAGAGGAGCAGCTGCACAGCACAACGCCTTTCTCTTTCACCAG
Seq C2 exon
CACGAGTAGCAGGAGCCTGGCTGCCTGTCCTGCCACCTGCTGTACCTTGGAGGCAAATGGCTGCAACAGTCACTGCCAGCTTTGCACCGAGTTAATAAATGGAGGTGTGCCAGGACCGGCTCCTTTGTGTCTGTGCTGGTACCAGGGGCTGCAGCAGGGAGGTGCAGGGGGAGCTGGGATCCCTTTCCCAGCTGGGAGCATCTTTCAGAGGCAGGCAGCAGCAAGAGGGACAGGCCTTTCCTCACCCTCCACCAGTTTGCTCCAGCTGGGAAAAAGAGTCCTCTCCTCACTCCCATCAAAAGCCCCAAGCACACACTGAGCTGGGACAGAGCAGAGCTGAGGGACAGGGCAGGGTGGAGTGCAGAACAGACCTCACCAAACCCCCTAGTCCCAGGGCCAAACATAACCATCATAAGCACAATCCTGTGCAGCACAAAGAGGTTGATCATGGCTTTGGCAAAGGGACTATGAAAGAAAAGACATCTCCACTAGTTTCTTTAAAATAGATTTCTTTAATAGTTTCCATTTAATATGTTTATTTGCAGTTAGTAAATTGGCATTCAGCTGGGCAGCACACACCTCAGCGCTCCGTGGGGACAGTGCAGACTTCCAGCTGTGGTAGTGACCGGGCTCCCAGCTCTGTCCCCATCCTCACGCCCACTGCAGCCTCTGCCTGGTCCCAAGGAGGAGCACTGCTCATTTGTCTGCCAGCTGCCCCAGGCAGCCCCACCTGTGCTGGGCTCCGTGCCCCCTGGGAGCAGTGCTGGCCCCCTACAGTCCAGCACATGCTGTTGCTGGAGACTTCCAGCCTGGGCCTCTGCAGCCAGCTCAGCCTGAAGGTGGATGCAGAACCAAGCTGCTTGCAGCAGGCAGTGCCCAAAATGCAGGGCAGAGTGGAAACGGCCACACTCCCACATGGGGAGGAAGATTCACCAGCTGGGAGCACAGCCAAGGACAGACAGAGCCTGGCCCCTCACTGCTCGTTACATAAATACAGAGATGTAAATGAGACTTCGCAGGTTTATAGCAGCAATCATTGGATACACCAATTAACTAGACTATGGAAAAGGCATCCCTTAACTTAAAAGCCTTTTAATTTGAAGCATTTATTTTAAGTGTACATCTATTACAGTTAAGAAGAAGCAAAGATACACCAAAAACACAAATACCCAAGAACAAAAAAGTACAGGTGAGAAAGAAATAAGCTGGGGGAGAGAGGGCACAGGGTGAGGGGGACCTGATGGAGAGCAGAGGGGCAGCTGCCAGAGCAAGGAGCTCCCCAGCACCCTGGAGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.478 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=87.0),PF0003816=Filament=PD(16.5=93.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACGAGCTGACATTGCTG
R:
TTAACTCGGTGCAAAGCTGGC
Band lengths:
169-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]