DreINT0099946 @ danRer10
Intron Retention
Gene
ENSDARG00000035322 | myh7bb
Description
myosin, heavy chain 7B, cardiac muscle, beta b [Source:ZFIN;Acc:ZDB-GENE-090311-5]
Coordinates
chr23:18827950-18830735:+
Coord C1 exon
chr23:18827950-18828087
Coord A exon
chr23:18828088-18830358
Coord C2 exon
chr23:18830359-18830735
Length
2271 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTA
5' ss Score
5.69
3' ss Seq
ACGTACCTTTTTGTTTACAGGTC
3' ss Score
10.52
Exon sequences
Seq C1 exon
GAGGAGCAGGTGAACTGCAACATGACTCGGTTCCGAAAGATCCAGCATGATCTGGATGAGGCAGAGGAGAGGGCAGACATGGCTGAATCTCAAGTCAACAAGCTGCGTGTCCGCACCAGAGAGACTCATGTCGTCAAG
Seq A exon
GTAGTACACAGTAAACTCATGTAATGAAAAATACCAGTTGCCAAACAAATGAGCCAGGCCTGTCACAATGACTGATTTAAATGCATAATGGTTGAAAAACACCCCAGTTTTACGTTTAACATTTATGTCATGCTAAATAGTCTAATCATTTATATATGAGCAATATCACATGAGTAGCAGTGCGATGTGGCTGTGTATCAGCAATGGTGGGAGGCGTGTGTTGTGCCTTAATGCTCCACCAGTGACGATATACAGCCACATTGCAATGCTACGAGTGTGATATTGCGTTTATAAAACAGTTCGATGGCATAATCGTGTGTATTAAAAAGAAAATCAAACACAAGAGTCCAAAAATCCACTTGTAAAAGGAGCTACTTTCGTCCGTCATTCATTCACCTCTGCAGCTGATGTCAGAACAGCAGATACCGTTGCTACCTCATCAACTACACTTTAGAGCCAGTATTTGAATGATTCTCTAGCGTACTGTCTTAAGTGATGACAAAACTGTTGATTTTGCTCACATTTTAAGATTATAAGGCTGAACAGCATCAAATGCCATCAGCCTACACAGATTTTCCAGTATTTCTTTGTTGCCATTGGGAGATCACAATAATTAATCCAGAAAAAAGCCAAAGCAACGCAATTAATAACAGATTACTGTTTTAGTTGCTATTGAAGAAAAATGTGAAACACATGCCGGCATTTCTTCTTTCTTTCTGTTTACTGAACTAGTCTACAAAAACAGAGACTCATTAGAAACAGTTGGCCATCTCTGGTTTTAAGACTTTAAGATGAGTCCAATCTCACACTCAACACACTACAATTACTATGATATAAATACACCTCTACAATATACAAAAGAAGAGATCGACTTAGAATGTCACTTACCAGTTTTATAATGATTTGATCAGCTGTAGTTTAAAATCACACTGGATTTTTCCTCCTCTAAGGGCTTATTATGCGGTCTTTGTCGCCATCTTGTTAACCGTCTTTGCTAATAGCCGCCAACGTGCTGTCTCTTAGAAATTATAAATTTTTAACATAGGCACTGTGCTTATAAATAAACTGCTTAGTTACAATCTAAACAACTACATTCTCGCCTGAAAAGCCTCAAAAGTACATGATGTTTTCCAACAGCAGCAATATTTGTCAAATTGTAGAGTGTCCTCTGCTTGTTGCTGTATGTGGAAGTAATACACAAGGGTGAAGGGTGAAGAGGCTGTACAAGTGCAGTTACTGCCAGAATATCGCACGGCTATCAGCCAATCAGATTCAAGAACCAGACAGAACTGTTGTATAAATTATTATATAAGCCCCTTTCAAACCATAATACCGGTAAACTGATATAAAATTTCCAGAACATTAAAAAATATGTTGTTTACACACAGCAGAATTCCAGCAATGTACTGGTAATGGTACAACTTGTTTTTGAAATTTCCAGTATTTGATTTGCCAAAAAAGTCTGCATGTGTAAAAGGGGCTATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTAATTATATTATATTATATTATATTATATTATATTATATAATAGTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATAATAGTATATTATATTATATTATATTATATAATAGTATATTAATTATATTATATTATATTATATTATATTATATTATATTATATAATAGTATATTATATTATATTATATTATATAATAGTATATTATATTATATTATATTATATAATAGTATATTATATTATATTATATTATATTATATTATATTATATTATAGTATATTAATTATATTATATTATATTATATTATATTATATTATATTATATTATATTATATTTCAAGTACAAATTTTTTTATTTGAAGGTCAGAATATGACAATAGCTCTATATTTTAAGTTAAAACAATGACATCATTAAATCACAGTTATTATTTGTTAAAGCAACAGAATTTGTGATTGTGACAGGTCTAATCAGAACTCAAAATGCGATGTTTTAGTTTTGTTCATACTGTGAATGTCATTGTGGTTTAAAACAACTCATTGATCTTGTGTATGGACTGAAAACACTGATATCTTCTTTTATGTTTGAAGACATACAAAAAATACTGACGTGCAACACTAAAAAGTGTCTGTGAAGTGCGAGTAAAAATAAAAGTGAATGCTGAAAAACGTACCTTTTTGTTTACAG
Seq C2 exon
GTCGTGGAGTGACGACTGACTTAAGCAGATGACTTACTAGAGTCATAGCGTGTGACGAGTACCTTTCCTTCTATTTGGTCTTCGTAAAATGCTGCAAGACACAGTTTTTGGAAATGTTTAATGCTTACTGAATGTCAATGCTTATTTTCAGATGTAAAACTTTAGTCTTCAAAAGTTTTTGTTCTTATGTCTGTCTTGGGACAGGCTCAGTCCGCAGAGCTCCTAATTAGCAGTTTTAATCACAGTGCAGTTACAGTACAGCTGAAGGTTGTTTTTCTTTAGCCTTCTGTAGCATCTGATTTGAAACTGGAGCTTTATGGACAGGTTGTTTGAAAAGTTATTTGGATATTATAAACAAAACAGCACTTAATTGGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035322:ENSDART00000137438:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=87.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]