HsaINT0107913 @ hg19

Intron Retention

Gene

ENSG00000078814 | MYH7B

Description

myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:15906]

Coordinates

chr20:33589751-33590240:+

Coord C1 exon

chr20:33589751-33589888

Coord A exon

chr20:33589889-33589979

Coord C2 exon

chr20:33589980-33590240

Length

91 bp

Sequences

Splice sites

5' ss Seq

AAGGTGAGG

5' ss Score

9.16

3' ss Seq

AGCTATCCCTTTCTCCTCAGCAC

3' ss Score

6.55

Exon sequences

Seq C1 exon

GAGCAGCAGGCCAACACCAACCTGGCCAAGTATCGCAAGGCCCAGCACGAGCTGGATGATGCGGAGGAGCGGGCAGACATGGCGGAAACCCAGGCCAACAAGCTGCGGGCACGGACCCGGGACGCCCTGGGCCCCAAG

Seq A exon

GTGAGGAGTGGCAGGGGCATTGCTCTCTGTGCAGGGGGACTGTGGGGGCTGACAGGTAGTACTGCTCACTCAGCTATCCCTTTCTCCTCAG

Seq C2 exon

CACAAGGAGTGACGGCCTGACCCCCTGGGCTCTAAAGAGGAATGTCTGCTGTTGCACATCTGGCTGAGGCCACCTGCCCCGATCCTGCCATCTCTGCATCGCCCCCTGCTGCCTTCAGCCTTCCCTGGGCCCTGAATAAACACCACAGCCAGTTTCCTTCTCATTCTTTTCTTTGGGGTTCAGGAGGAAAAACACAGTCCTAGGGACAAAAGCCAGGTCCACAGCAGTCATTTTTAAAATAAAGTTATTTAATAGTCTCCA

VastDB Features

Vast-tools module Information

Secondary ID

ENSG00000078814-MYH7B:NM_020884:44

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

Alternative protein isoforms

No structure available

Features

Disorder rate (Iupred):

C1=0.927 A=NA C2=0.746

Domain overlap (PFAM):

C1:

PF0157614=Myosin_tail_1=PD(37.0=87.0),PF096025=PhaP_Bmeg=FE(36.9=100),PF131661=AAA_13=FE(37.2=100),PF0003816=Filament=PD(37.6=89.1),PF060097=Laminin_II=PD(13.2=19.6),PF150701=GOLGA2L5=FE(40.5=100),PF117273=ISG65-75=FE(39.8=100),PF044267=Bul1_C=PD(35.9=71.7),PF150351=Rootletin=PD(53.8=91.3)

A:

NA

C2:

PF117273=ISG65-75=PD(2.2=50.0)

Main Inclusion Isoform:

ENSP00000396368