HsaINT0107913 @ hg38
Intron Retention
Gene
ENSG00000078814 | MYH7B
Description
myosin heavy chain 7B [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr20:35001948-35002437:+
Coord C1 exon
chr20:35001948-35002085
Coord A exon
chr20:35002086-35002176
Coord C2 exon
chr20:35002177-35002437
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGCTATCCCTTTCTCCTCAGCAC
3' ss Score
6.55
Exon sequences
Seq C1 exon
GAGCAGCAGGCCAACACCAACCTGGCCAAGTATCGCAAGGCCCAGCACGAGCTGGATGATGCGGAGGAGCGGGCAGACATGGCGGAAACCCAGGCCAACAAGCTGCGGGCACGGACCCGGGACGCCCTGGGCCCCAAG
Seq A exon
GTGAGGAGTGGCAGGGGCATTGCTCTCTGTGCAGGGGGACTGTGGGGGCTGACAGGTAGTACTGCTCACTCAGCTATCCCTTTCTCCTCAG
Seq C2 exon
CACAAGGAGTGACGGCCTGACCCCCTGGGCTCTAAAGAGGAATGTCTGCTGTTGCACATCTGGCTGAGGCCACCTGCCCCGATCCTGCCATCTCTGCATCGCCCCCTGCTGCCTTCAGCCTTCCCTGGGCCCTGAATAAACACCACAGCCAGTTTCCTTCTCATTCTTTTCTTTGGGGTTCAGGAGGAAAAACACAGTCCTAGGGACAAAAGCCAGGTCCACAGCAGTCATTTTTAAAATAAAGTTATTTAATAGTCTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000078814:ENST00000262873:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.957 A=NA C2=0.746
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(37.0=48.2),PF101464=zf-C4H2=PD(51.8=88.0),PF117273=ISG65-75=PD(43.0=59.0),PF150701=GOLGA2L5=PD(45.9=60.2),PF150351=Rootletin=PD(54.4=51.8)
A:
NA
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCTGGCCAAGTATCGCAAG
R:
CCAGATGTGCAACAGCAGACA
Band lengths:
183-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development