BtaINT0097385 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64912398-64912758:+
Coord C1 exon
chr13:64912398-64912535
Coord A exon
chr13:64912536-64912610
Coord C2 exon
chr13:64912611-64912758
Length
75 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
AGGCACCCCTCTCCCTTTAGCAC
3' ss Score
6.9
Exon sequences
Seq C1 exon
GAGCAGCAGGCCAACACCAACCTAGCCAAGTATCGAAAGGCCCAGCATGAGCTGGATGATGCAGAGGAGCGGGCAGACATGGCGGAAACCCAGGCCAACAAGCTGCGGGCACGCACCCGGGACGCCCTGGGCCCCAAG
Seq A exon
GTGAGGGGTGGTGTGGGGCACCCTCCCTGCCCTCTGCCCCGGAAGCCGCTCACTCAGGCACCCCTCTCCCTTTAG
Seq C2 exon
CACAAGGAGTGACACTGGAACCCTGGGCTCTGGGAAAAGAGGGACACCTGCTGTCTGCCCCAGCCTGATCCTGGCCTCTCTTCATTCACACATGCTGGAGCCTCGCCACCCCAAGCCCTGCTCCACCTTGAATAAACCCCGTGGCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=87.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAGCTGGATGATGCAGAGGA
R:
TGAAGAGAGGCCAGGATCAGG
Band lengths:
175-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development