RnoINT0096582 @ rn6
Intron Retention
Gene
ENSRNOG00000018997 | Myh7b
Description
myosin heavy chain 7B [Source:RGD Symbol;Acc:1307994]
Coordinates
chr3:151149980-151150344:+
Coord C1 exon
chr3:151149980-151150117
Coord A exon
chr3:151150118-151150196
Coord C2 exon
chr3:151150197-151150344
Length
79 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
GCCTCTTTCTCATCTCTTAGCAC
3' ss Score
8.36
Exon sequences
Seq C1 exon
GAGCAGCAGGCCAGTACCAACCTGGCTAAGTACCGCAAGGCCCAGCACGAGTTAGACGACGCTGAGGAGCGGGCAGACATGGCAGAGACCCAGGCCAACAAGCTGCGGGCAAGGTCCAGGGATGCCCTGGGTCCCAAG
Seq A exon
GTAAGGTGGCCACTGTGTTGGGTGGACACTGGGGAGACACGCACGGGTGACCTAGGTCAGCCTCTTTCTCATCTCTTAG
Seq C2 exon
CACAAGGAGTGAGAGACTCCAGCTCTGACGAGGGATACCCCGTGCTCCTGTTGTCTTTCCACCTGCCACTCCACAGAGCTCTGGAACCCCAAATAAACACCACATCTGCAGCAGCAGCCGCTGTCCTGTCCTTATTTCTTGCGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018997:ENSRNOT00000025859:40
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=87.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGTACCAACCTGGCTAAG
R:
GTATCCCTCGTCAGAGCTGGA
Band lengths:
167-246
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]