MmuINT0103639 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155459599-155460043:+
Coord C1 exon
chr2:155459599-155459736
Coord A exon
chr2:155459737-155459815
Coord C2 exon
chr2:155459816-155460043
Length
79 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GCTTCTTTTTCATCTCTTAGCAC
3' ss Score
7.02
Exon sequences
Seq C1 exon
GAGCAGCAGGCCAGTACCAACCTGGCTAAGTACCGCAAGGCCCAGCACGAGCTGGATGATGCCGAGGAACGGGCAGACATGGCAGAGACCCAGGCCAACAAGCTGCGGGCAAGGTCCAGGGATGCCCTGGGCCCCAAG
Seq A exon
GTGAGGCAGCCTCTGTGTCGGGGGGGCTGAACTTAGGGAAGCACAGGTGACGTGGTTCAGCTTCTTTTTCATCTCTTAG
Seq C2 exon
CACAAGGAGTGACACCCAGGCTCTGAGGAGGGATACCCCACCCCTGCGATCCTGTTGTCTCTTTCCATCTGCCACTCCACCCTCCCTGAGCCCCTGAACCCCAAATAAACACCCTGTCTGCAGCAGTAGCCACTGTCCTTATTTCTTGGGGCTAGAGGAGCTGGGAACAGAACATCATGGACAAAGTCAGGTCCACATCAGTCTTTAAAATAAAGTTCTTTAATAGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:41
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=PD(4.7=87.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATGATGCCGAGGAACG
R:
GGTGGAGTGGCAGATGGAAAG
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: