BtaINT0097325 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009703 | MYH7
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1MM07]
Coordinates
chr10:21328500-21328938:+
Coord C1 exon
chr10:21328500-21328598
Coord A exon
chr10:21328599-21328834
Coord C2 exon
chr10:21328835-21328938
Length
236 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
GTCTCTCCCCCCACCCCCAGACA
3' ss Score
10.09
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAATCCAGAGTTATTTTCCAGCTGAAAGCAGAGAGAGATTATCATATTTTCTACCAAATCCTGTCCAACAAAAAGCCTGAGCTGCTGG
Seq A exon
GTGAGTCACAGCTACCAATTGAGACCAACTATTTCCATGGCAACCTGGTCCCCTCCACTTGCAGCTGCTTGTTGACAGGCCCTGAGTTTATCGCACTGCTGGATCAGTTCTGTGGGATGCAGGACCCCATTAAGCCTTGTCATATGCTCTTTTGCAGGTCATGTGTCATGGCAGATAGCCCCAGGGAGGGCCAGGGGTTTGTGCCCCCATTCTAACGTCTCTCCCCCCACCCCCAG
Seq C2 exon
ACATGCTGCTGATCACCAACAACCCCTATGACTATGCATTCATCTCCCAAGGAGAGACCACTGTGGCCTCAATTGATGACGCTGAAGAGCTCATGGCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009703:ENSBTAT00000061306:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAATCCAGAGTTATTTTCCAGC
R:
ATCAGTGGCCATGAGCTCTTC
Band lengths:
196-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development