HsaINT0107837 @ hg38
Intron Retention
Gene
ENSG00000092054 | MYH7
Description
myosin heavy chain 7 [Source:HGNC Symbol;Acc:HGNC:7577]
Coordinates
chr14:23430560-23430999:-
Coord C1 exon
chr14:23430901-23430999
Coord A exon
chr14:23430664-23430900
Coord C2 exon
chr14:23430560-23430663
Length
237 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
AACCATGTTTTTTCCCCTAGACA
3' ss Score
9.52
Exon sequences
Seq C1 exon
ATCTTCTGGAAAAATCCAGAGTTATTTTCCAGCTGAAAGCAGAGAGAGATTATCACATTTTCTACCAAATCCTGTCTAACAAAAAGCCTGAGCTGCTGG
Seq A exon
GTGAGTCAGAGCCACCGACTGAGACCAACTATCTCCATGGCAACCTGGTCCCCTCTGCTTGTGGCTGGACTCAGCTGGCATGCCCTGGGTTTCATGGCACTGCTGGATTCAATTCAGTGGGATGTGGGGCCAAGCCAAGCCCTGTCCTGTGCTCTTCCTCAGGCCATGTGCTGTGGCGAGCAGCCTCCATGAGAGCCGGGGGCTTGTGTCCCACCCTAACCATGTTTTTTCCCCTAG
Seq C2 exon
ACATGCTGCTGATCACCAACAACCCCTACGATTATGCATTCATCTCCCAAGGAGAGACCACCGTGGCCTCCATTGATGACGCTGAGGAGCTCATGGCCACTGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092054:ENST00000355349:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAATCCAGAGTTATTTTCCAGC
R:
ATCAGTGGCCATGAGCTCCTC
Band lengths:
196-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development