MmuINT0103568 @ mm10
Intron Retention
Gene
ENSMUSG00000053093 | Myh7
Description
myosin, heavy polypeptide 7, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:2155600]
Coordinates
chr14:54989978-54990403:-
Coord C1 exon
chr14:54990305-54990403
Coord A exon
chr14:54990082-54990304
Coord C2 exon
chr14:54989978-54990081
Length
223 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CACATTCCTTCCACTTGTAGACA
3' ss Score
9.27
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAATCCAGGGTTATTTTCCAGCTGAAAGCAGAAAGAGATTATCACATTTTCTACCAAATCCTGTCTAATAAAAAGCCTGAGCTTCTAG
Seq A exon
GTGAGTCAGACTGAGACCAGCTATTTCCATGGCAACCTGGTCCTCTCTGCTTAAGACTGGGTTCAGGCAGTATGCCTTGGGCCCTATGATACTGCTAGGTTCAATCTTGGGGGTCAAATCAAGCCCTATCTGAGCCTCTCTCTTGGCCTGTTTGCTATAGCCAGCAGCCCCCAGGATAGCCAGGGGCTGTGGCACACCCGAACCACATTCCTTCCACTTGTAG
Seq C2 exon
ACATGCTGCTGATCACCAACAACCCCTACGATTATGCGTTCATCTCCCAAGGAGAGACGACTGTGGCCTCCATTGATGACTCTGAAGAGCTCATGGCCACGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000053093:ENSMUST00000102803:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAATCCAGGGTTATTTTCCAGC
R:
ATCCGTGGCCATGAGCTCTTC
Band lengths:
196-419
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types