RnoINT0096546 @ rn6
Intron Retention
Gene
ENSRNOG00000016983 | Myh7
Description
myosin heavy chain 7 [Source:RGD Symbol;Acc:62030]
Coordinates
chr15:33653376-33653800:-
Coord C1 exon
chr15:33653702-33653800
Coord A exon
chr15:33653480-33653701
Coord C2 exon
chr15:33653376-33653479
Length
222 bp
Sequences
Splice sites
5' ss Seq
TAGGTGAGT
5' ss Score
8.83
3' ss Seq
CACATTTTTTCCATTCTTAGACA
3' ss Score
7.88
Exon sequences
Seq C1 exon
ACCTTCTGGAAAAATCCAGGGTTATTTTCCAGCTGAAAGCAGAAAGAGATTATCACATTTTCTACCAAATCCTGTCTAATAAAAAGCCTGAGCTTCTAG
Seq A exon
GTGAGTCAGACCGAGACCAGATATTTCCATGGCAACCTGGTCCTCTCTGCTTAAGGCTGGGTTCTGGCAGTATGCCTTGGGCCCTATGATGCTGCTAGATTCAATCTTGGGGGTCAAGTCTAGTTCTATCTGAGCCTCTCCCTTGGTCTGTCTGCTATAGCCAGCAGCCCCCAGGATAGCCAGGGGTTGTGCACATCCGAACCACATTTTTTCCATTCTTAG
Seq C2 exon
ACATGCTGCTGATCACCAACAACCCCTACGATTATGCGTTCATCTCCCAGGGAGAGACGACTGTGGCCTCAATAGATGACTCTGAAGAGCTCATGGCCACCGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016983:ENSRNOT00000024186:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(4.9=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(5.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAAATCCAGGGTTATTTTCCAGC
R:
ATCGGTGGCCATGAGCTCTTC
Band lengths:
196-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]