BtaINT0097363 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64901078-64902987:+
Coord C1 exon
chr13:64901078-64901195
Coord A exon
chr13:64901196-64902863
Coord C2 exon
chr13:64902864-64902987
Length
1668 bp
Sequences
Splice sites
5' ss Seq
GCGGTGGGT
5' ss Score
6.6
3' ss Seq
ACCCTTCCCCACCCCCTCAGGTA
3' ss Score
10.2
Exon sequences
Seq C1 exon
GGGTCATGGACGCCTTCCTGGTGCTGCACCAGTTGCGCTGCAATGGGGTGCTGGAGGGGATCCGGATCTGCCGACAGGGGTTCCCCAACAGGCTGCTCTACACTGACTTCCGGCAGCG
Seq A exon
GTGGGTGTCTCCCGGCCCCAGCCCTGGCTCCTCCCTAGCTCCCCCGCCAGCCACCTTCCCTCTTACCTTCCTCCCAGGTGGAGGCAGAAGGTTGGGTGGGGTAGGAAGGGCACCAAGGAGGATGCAGGAGGGCTGGGGAGGGGGCTGGGGGGCATCCCAGTGGGAAATGCTAGTCGGTGAGACCTGAGGGACTGGGTTTGGGAGAAGTGAACAGGCTCTGGGTAAATACTGCAGCTTCAGCCAGCAGGGTTTGCTAATGAACTGGAAGTGGAAAGAGAATGAAAAAGACAGGGGTGACTTCCAGGTGTTTGGCCTATCAACTGGGGAGTTGGTGGTAGATTTACTAAGAAACCAAGATAGATTTTTAAACTTTTGGCAGGGGGAGGTAGGTGGACAGTGGATTGAACTCTCCTTGGAACATGTCAGACTTGAAATGTCTCCAGCAGGAAGCCCAGGAGGGAGGTCGGGCAGGCAGAGCCAGGTGTGGATTTGGGAGTTGAATGAGGGTTCACATGGACTAGGCTTTATGTAATGCCTGGCAACGAGCGCTTGGTCAGTGCTGTAGCCTCTCTGCCTTCCCTTTATAGGTTTGACTTTTGTCTGGCTGCAATTGTCCACGGGTCCCTCCCTCTTCAGAAGTAATTGTGGCCATCCATGCTGACCATTATACATGTGTGTCTGTAGAAATACTTTACACATGGGTGCACACACACACATGCGCACACACGCATGAGCACACACACACACATGAACATGCACACATGAGAACACACACATGTTCTATTTTTTCCCTGTAACCGTGTCTTGGGGATTGTTCCTTGTTAATAGACATAAGTCTGCATCATCATCCTCTTTAAAAAACATGAAGACTATTTTTTAGAGTAGTTTAAGGTTTGCAGCAGAATTGAGGGGAAGGTACAGGAAATTCTGACAGTCCTGCCTCCCCTGTGGTCAGTGAACCCCACCAGAGTGGGGCATCTGTTACGGTGGTGTCATAATCCCTCAGTGTGTATAGTCACCATTACAGTCCGTTCTCAGTATTGTGCCTTCTAGGACTTTGGGTAAGTGTAATGACAAGGAGCATCATCCATTTTGTTATGGAGTGAAGTCCTCTGTAATCTAGTGACCCGTGCTTTGTAATCAGTCCCTTAGTGAGGGCCCTTTTGTGTTTCCAGGGTTTTGCCTTCACAGTGTGGTCAGCGCAACCTGACCCACACGGCCCTGTGCACACGTGCAAGTGTGTCCTTTTAGAAGTGGGCATGCCGGAACCCTTATTGATCTTGTGATCCACAAGATCGTGATCTTATCAATCACAATTCTCTCCCAATGCTTCTTCAGTTTGTGATATGCTGTAACACATCACCGTCTTTACTTTTTTATTGTCTTCTCAAAAAACTGATAAATAATTAAAAATTGTAAGTTAAAAATTATGACAGTGCCATAGGCCTTCTGTAAATACTGCCGCCTCTTAAAGAACTACTGAAGCCGTTTAAATATTACCTGAGCTTTTAAAGCAGAGTATGCCCACTCCCCGAGTATCACGAGGCTGTCAAGTGTCACCTGCCAGCTTGTTCAGTGGAGCCTGAACAAGCCTCCGAGAGGCCAGCCTCTCCAGTCCTCTGCTCCCTGCCCAGCACCCTCCTCACCAACCCTTCCCCACCCCCTCAG
Seq C2 exon
GTACCGCATCCTGAACCCCAGCGCCATCCCGGACGACACCTTCATGGACAGCAGGAAGGCTACAGAGAAGCTGCTGGGCTCACTGGACATCGACCACACCCAGTACCAGTTTGGCCACACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCATGGACGCCTTCCTG
R:
GGTGTGGCCAAACTGGTACTG
Band lengths:
238-1906
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development