GgaINT0010711 @ galGal3
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
NA
Coordinates
chr20:2596860-2597702:-
Coord C1 exon
chr20:2597585-2597702
Coord A exon
chr20:2596984-2597584
Coord C2 exon
chr20:2596860-2596983
Length
601 bp
Sequences
Splice sites
5' ss Seq
GCGGTAACT
5' ss Score
6.77
3' ss Seq
CCCCTGCTTTGTGCTTGCAGCTA
3' ss Score
10.18
Exon sequences
Seq C1 exon
GAGCCATGGATGCCTTTCTGGTGCTGCACCAGCTGCGGTGTAACGGTGTCCTTGAAGGTATCCGCATCTGCCGTAAGGGATTTCCCAACAGGATCCTCTACGCAGACTTCAAGCAGCG
Seq A exon
GTAACTCCCTCTTCTCCCCTGCCCAGCTGCCAACATGTGTTCTGGGGGAGCTAAACTCCCAGCTTGTGCACGGCTGCTCTGAAGCCCACATTACGTGCAGTGTGTGCACAGGTCAGGATAGCTGTGCAGTTGTCTCTGTGGTGCCAAATGTGGATAGTTTTGTGCCAGGCACAGTGAGACAGGAGGGGTACTGATATTTAAGGTGCTGAATGCAGGATTGAAGCAGGTGATTGGTGGCACGGCACAGGACCTCTGATCCTGGTTCTGATATCCTTCTGCTCTTGGCATCGTTACCATTCCCCAGGTTGACTTCATTCATCCTGCTCAGCCTGGGTCTGAGCCAGACAAGGTGAGGCCAGTGGCCTCCTCCTGCACAGTCCTCCTGTACAGGGACTAAGATATGGCAGGGTTTCCTGGGGTCTGCTCTGCAGCAGATCCCAAACTGAAGCCTGGTTCTCCTGATCCATTTGTGGCTTCATCATGTACTGTAGTGATGCGGTGCCAGGGGAACTGGCACGACTTGGATACAGGGACAATGATGGAGCCACCAACTCTGTGCTGAAGTTCTCTTGAATTCCCTGCCCCTGCTTTGTGCTTGCAG
Seq C2 exon
CTACCGTATTCTGAACCCAGCAGCCATTCCAGATGACAAGTTTGTGGACAGCAGAAAGGCCACAGAGAAGCTGCTGAGCTCTCTGGAACTGGATCACTCCCAGTACAAGTTTGGTCATACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000004997:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.7=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(6.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCATGGATGCCTTTCTGG
R:
GGTATGACCAAACTTGTACTGGGA
Band lengths:
239-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]