GgaINT0010711 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2952653-2953495:-
Coord C1 exon
chr20:2953378-2953495
Coord A exon
chr20:2952777-2953377
Coord C2 exon
chr20:2952653-2952776
Length
601 bp
Sequences
Splice sites
5' ss Seq
GCGGTAACT
5' ss Score
6.77
3' ss Seq
CCCCTGCTTTGTGCTTGCAGCTA
3' ss Score
10.18
Exon sequences
Seq C1 exon
GAGCCATGGATGCCTTTCTGGTGCTGCACCAGCTGCGGTGTAACGGTGTCCTTGAAGGTATCCGCATCTGCCGTAAGGGATTTCCCAACAGGATCCTCTACGCAGACTTCAAGCAGCG
Seq A exon
GTAACTCCCTCTTCTCCCCTGCCCAGCTGCCAACATGTGTTCTGGGGGAGCTAAACTCCCAGCTTGTGCACGGCTGCTCTGAAGCCCACATTACGTGCAGTGTGTGCACAGGTCAGGATAGCTGTGCAGTTGTCTCTGTGGTGCCAAATGTGGATAGTTTTGTGCCAGGCACAGTGAGACAGGAGGGGTACTGATATTTAAGGTGCTGAATGCAGGATTGAAGCAGGTGATTGGTGGCACGGCACAGGACCTCTGATCCTGGTTCTGATATCCTTCTGCTCTTGGCATCGTTACCATTCCCCAGGTTGACTTCATTCATCCTGCTCAGCCTGGGTCTGAGCCAGACAAGGTGAGGCCAGTGGCCTCCTCCTGCACAGTCCTCCTGTACAGGGACTAAGATATGGCAGGGTTTCCTGGGGTCTGCTCTGCAGCAGATCCCAAACTGAAGCCTGGTTCTCCTGATCCATTTGTGGCTTCATCATGTACTGTAGTGATGCGGTGCCAGGGGAACTGGCACGACTTGGATACAGGGACAATGATGGAGCCACCAACTCTGTGCTGAAGTTCTCTTGAATTCCCTGCCCCTGCTTTGTGCTTGCAG
Seq C2 exon
CTACCGTATTCTGAACCCAGCAGCCATTCCAGATGACAAGTTTGTGGACAGCAGAAAGGCCACAGAGAAGCTGCTGAGCTCTCTGGAACTGGATCACTCCCAGTACAAGTTTGGTCATACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(7.2=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(7.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCATGGATGCCTTTCTGG
R:
GGTATGACCAAACTTGTACTGGGA
Band lengths:
239-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]