BtaINT0097367 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64905584-64906660:+
Coord C1 exon
chr13:64905584-64905826
Coord A exon
chr13:64905827-64906483
Coord C2 exon
chr13:64906484-64906660
Length
657 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
TGACCTTGGCCCCGACACAGGTG
3' ss Score
5.17
Exon sequences
Seq C1 exon
GAGCAGGAAAACCTGGCGGATGCTGAGGAGCGCTGCCACTTGCTCATCAAGTCCAAGGTGCAGCTGGAGGCAAAGGTGAAGGAGCTGAGCGAGCGGCTGGAGGACGAGGAGGAAGTGAATGCAGACCTGGCTGCCCGCCGCCGCAAGCTGGAGGACGAGTGCACAGAGCTCAAGAAGGACATTGACGACCTGGAGCTGACGCTGGCCAAGGCCGAGAAGGAGAAGCAAGCCACGGAGAATAAG
Seq A exon
GTGTGGGTGCGGGGTGGGGTGGGGAAGAGCTGTGGGGCCAGGCACCTGAAAGTCCCACACCTGTGTGGCCCTGGGCAGGTCTCATCCTCTGAGCCTCAGTTTCCTCCTCTGTCAAATGGGGCTAATAGCAGCACTTCCCTAATTAGGGCGGGTGAGGATTCAGCGTGTAAGTAGGCTGTGCGAGCACTCGCCACCAAGCCTCACACATAGTAGGTACTCAGCAGATGCTCGGATCGTCATCCACCAGCTCCATGTGCCCCAGGGGCCTTCCCTCATTGAACCCTCTCGAGAGCCCGTTGGTTCACACTCTGGGGGGACTGACTCCATCATACAGGAGGGGAAGGTGAGGCTCTGGGGGAGGGTGAGCTGCTTATTCAGGTTCTCACAGGTGCTCCCTGAGGAAGCCAGGAGTAAGAACAGCTGCTTAAACACCCCTGAATACCCAAATAGCTGGCATCTATTGATCTCTCAGTGCCAGCCAGACACTGGGGAAGGGCTCAGTAATCCCTCAAGGAGGAAGTTACAACCATCCCTGAAGTATGAAGAAATTGAGGCTCGGGATGAACTGACTCACCTGAGGTTCCCTGGCTGGAAGGGGCAGCTGCTCAGGCCAGAGTTGGGGGAGGCAGCCCCACAGTGACCTTGGCCCCGACACAG
Seq C2 exon
GTGAAGAATCTGACAGAGGAGATGGCAGCACTGGACGAGTCTGTGGTCCGGCTGACCAAGGAGAAGAAGGCCTTGCAGGAGGCCCACCAGCAGGCCCTGGGTGACCTGCAGGCTGAGGAGGACCGTGTGAGCGCGCTGGCCAAGGCCAAGGTTCGGCTGGAGCAGCAGGTGGAAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.296 A=NA C2=0.356
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(34.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(25.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAAGGTGAAGGAGCTGAG
R:
ATCTTCCACCTGCTGCTCCAG
Band lengths:
352-1009
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development