MmuINT0103621 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155453308-155454405:+
Coord C1 exon
chr2:155453308-155453550
Coord A exon
chr2:155453551-155454228
Coord C2 exon
chr2:155454229-155454405
Length
678 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGG
5' ss Score
5.28
3' ss Seq
GAAATCGGGCCTTGACACAGGTG
3' ss Score
3.66
Exon sequences
Seq C1 exon
GAGCAGGACAACCTCGCAGATGCAGAGGAGCGCTGCCACTTGCTGATCAAGTCCAAGGTGCAGCTGGAGGCGAAGGTGAAGGAGCTGAGCGAGCGGCTGGAGGACGAGGAGGAAGTGAACGCGGACCTGGCCGCCCGCAGGCGCAAGCTGGAGGACGAGTGCACGGAGCTCAAGAAAGACATCGATGACCTGGAGCTGACGCTGGCCAAGGCCGAGAAAGAGAAACAAGCCACAGAGAACAAG
Seq A exon
GTGTGGGAAGGGCCTGAGCTGGGGGCCAGTTTTGGTGTTAGGCAACTGCAGGGTTCCTCCCTAAAACCCCGCTCTGCATGGGTACCTGCCATGTAGCCCGAGTCAGGCCACAGAGCCTCTTAAGAACCTCCGTTTTCTGGTCCGTCAAGTGGGGGTACCAGCACTTACATTATTAGGGTGACTAAGGATTTGGATGTAAGTAGCCTTTGCTAAGCACATACTACAGGACCTTGCACACAGAAGGTGCTTAGTAAAGGCTTGCAATGATCATCGGTCCTGGATTGAAAAGCTTGTTGGGGGGAGGGCAGCTTGCCCGAACTGAGAATCCTATCACCGAGAGCCGTGGTTGCCAGCGTTGTGAGTATTGACTTTTACACAGAAGAGGAAACGAGGCTGTTTAGGTTCTTATGGGTGCCAAATATAAGGCCGCGGCTAGGACACAGCTCTCAGAATACCTGTTGCTATTGTAAATGGCTGCCACCCACTAGTCTTTTACTCTGAGCTATGTATGCTTGGGTATGAACCTTTACCCAGCTCAAGGAGGAGGTCAAACCTGTAGGCAGGAATGGTGGAGGCTCAGTATAGCGGCCTGCCTGCATCCTGTAGCTGGAAGGGGTGGCTGCTCAGACCAGCCTAGGGGGAGCACTGTCCTCACAGTGAAATCGGGCCTTGACACAG
Seq C2 exon
GTGAAGAACCTGACAGAAGAGATGGCGGCACTGGATGAAGCCGTGGTCCGCCTGACTAAGGAGAAGAAGGCATTGCAGGAGGCTCACCAGCAGGCTCTGGGTGACCTGCAGGCTGAGGAGGACCGTGTGAGCGCACTGGCCAAGGCCAAGATCCGGTTGGAACAGCAAGTGGAGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:25
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.284 A=NA C2=0.356
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(34.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(25.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGGTGAAGGAGCTGAGCGA
R:
ACTTGCTGTTCCAACCGGATC
Band lengths:
342-1020
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: