GgaINT0010715 @ galGal4
Intron Retention
Gene
ENSGALG00000003157 | MYH7B
Description
myosin-7B [Source:RefSeq peptide;Acc:NP_989918]
Coordinates
chr20:2949696-2950497:-
Coord C1 exon
chr20:2950255-2950497
Coord A exon
chr20:2949873-2950254
Coord C2 exon
chr20:2949696-2949872
Length
382 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTTTTACCTCTCTGATCTAGGTT
3' ss Score
10.91
Exon sequences
Seq C1 exon
GAGCAAGACAACCTGGCAGATGCAGAGGAACGCTGTGACCTTCTGATCAAGTCCAAGATCCAGCTGGAGGCCAAGGTGAAGGAGCTGACAGAGCGTGTGGAGGACGAGGAGGAGATGAACGCAGACCTCACTGCCAAGAAACGCAAGCTGGAGGATGAGTGTGCAGAGCTGAAGAAAGACATCGATGATCTAGAGATCACACTGGCCAAGGTGGAAAAGGAAAAGCATGCCACAGAGAACAAG
Seq A exon
GTAACTGACCCTTCCTGCAGGGAACAGCCTAATTGCCAAGATATGTCAGCCATTGTAGGGGCATGTAAGGGAATTACTGGGGACAATACTGCTAATGTGTGGGAGTTGAGGCTGGGCAGAGCGCAAGAAGGTATGGGAGAGAGTAAAACCTCCTGGTGTCCTGCCTTACTGCATGGGATTGGCATGGACAAATGAATCTGTGCAATAGCAAATGTTTTGGGGTTTTGACCAAAGCCAGCAAGGGGAAAGGAGCTGGCTGCTGCTGTGGTGCTGAGCTGCTGTTGATTATGGATTCCTGCCTTTCATGGGCCAAGCTGCTGTGTTAGCTTTGCATCACCTGTCTCTAAGAAGATGCACTTAGTTTTTTACCTCTCTGATCTAG
Seq C2 exon
GTTAAAAACCTGATTGAGGAGATGGCTGCTCTGGATGAGATTATTGCCAAGCTGACAAAAGAGAAGAAAGCACTACAAGAGGCCCATCAACAGGCCCTGGATGACTTGCAGGCTGAGGAAGATAAAGTCAACACGCTGACCAAAGCCAAGGTCAAACTGGAACAGCAAGTGGATGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003157:ENSGALT00000012499:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=NA C2=0.390
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(41.7=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=PD(29.7=96.6),PF0157614=Myosin_tail_1=PU(47.1=54.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGACAACCTGGCAGATGCAG
R:
CTCAGCCTGCAAGTCATCCAG
Band lengths:
356-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]