DreINT0099886 @ danRer10
Intron Retention
Gene
ENSDARG00000076075 | myh7ba
Description
myosin, heavy chain 7B, cardiac muscle, beta a [Source:ZFIN;Acc:ZDB-GENE-100914-2]
Coordinates
chr11:24959023-24959525:-
Coord C1 exon
chr11:24959283-24959525
Coord A exon
chr11:24959200-24959282
Coord C2 exon
chr11:24959023-24959199
Length
83 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
TCAAAGTTCCTTTTTTATAGGTG
3' ss Score
7.66
Exon sequences
Seq C1 exon
GAACAAGATAACCTTGCAGATGCAGAGGACCGCTGTGATCTGCTCATTAAGACCAAGATCCAACTTGAAGCCAAAGTAAAGGAGATGACCGAACGCCTGGAAGACGAAGAGGAGATGAATGCTACAGTTCTGGCAAAGAAGCGTAAACTGGAAGATGAGTGCGCCGAGCTGAAAAAAGACATCGATGATCTGGAGATAACCTTGGCCAAGGTGGAGAAGGAGAAGCATGCCACTGAAAACAAG
Seq A exon
GTGAGGCCATTCTGTTGTTCTGAAGACAAATGAAGCTCTTGCTTTGTTGTTGAAGTCAAATAATCAAAGTTCCTTTTTTATAG
Seq C2 exon
GTGAAGAATCTGATAGAAGAGATGGCAGCTTTGGATGAAACTATACTGAAGCTCACCAAAGAGAAAAAAGCCCTACAGGAGAGTCACCAGCAGACCTTGGACGACTTGCAGACAGAGGAAGACAAAGTCAATACTCTGACTAAGGCCAAAGCCAAGTTGGAGCAGCAAGTTGATGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076075:ENSDART00000097316:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.247 A=NA C2=0.508
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(40.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGATGAGTGCGCCGAG
R:
GGTGACTCTCCTGTAGGGCTT
Band lengths:
182-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]