BtaINT0097388 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003512 | MYH7B
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:HGNC Symbol;Acc:HGNC:15906]
Coordinates
chr13:64893826-64895257:+
Coord C1 exon
chr13:64893826-64893837
Coord A exon
chr13:64893838-64895164
Coord C2 exon
chr13:64895165-64895257
Length
1327 bp
Sequences
Splice sites
5' ss Seq
CAGGCAAGG
5' ss Score
3.33
3' ss Seq
ACCCCTCATCCTGCCACCAGGGC
3' ss Score
9.86
Exon sequences
Seq C1 exon
GGGAGCTGTCAG
Seq A exon
GCAAGGGAGGTAGAGAGAAAGCCTGGCCCACAGGGGCCATGGGCATTGTAGCTTAAAAACCTTATCAACCTGCCTCCCTTCTCTCCCAAATTTGACTACATCTATCAGAAGGAGCCCTATTCAAAAGCCTGGAGCTGAGTGTGTGGGGTGGAGCTCAGGGGAGGGCTCCTGCCATCTGTCTCCTGCCCCTGTCTCCCCAACAACAGCTCAGGGGGATTTTTAAGTCTTGGGCTCCCTGGAGGTGAGTGAATCACCAAAGTCTCATAGCATAGGACAGGTGGCATGGCACCTGTCACTCCAGAATCCATTCCTTCCTTTCCCCCCTTTTTTTCCCAGGGTGCTGGGATCCAGGGCAGGGAAGAGATAGAAGGGTAGATGGAGGGAAGATGAGGCTAGGAGAACAAGTGGGGAGGAGTCCTTTGGTTCAGCAAGTCCCTCTAGATGAGAGACAGGTGGCTTTGGGCGTCATGGGAAGCAGGATGCCTGGACTCAGTGTCTGCCCTGCCCCTGACTTACTGTGTCATCTTGAGCAGACACTTTCCAGCTCTGAGTCTTAGGTTCCTCATTTGCAAATTAGGGCTAATAATATGCACCTGGCAGGGCTATTTTGACTAATATTCGATATACAGTTGTACAGTGAAAATGCACCCAATCATAATAGAAAGGAGAAGTGTGAAGAAGGGCCATCACAGAGGGAGGTCAAGGGTCAGAAGGTTTGGACAGGAAGAGTCTCTTCCAGCCTCAGAGAATCAGGGAAGACTTCCTAGAGGAGGGGGCTTTTGAGCTGGACTCTAAAGGGGAGTAGATTGTAGTCAGGAACCTCTGGGGCTTGGAGCAGGGTCAATTCCAGGGGTGTGGGAAATGAAGGGATATGGAGGAGGCCAAAGACAGAGCTTTGGGACACTGTGGGTAGGGGACACCCACACACAGCTCCTGCCTCAAGCCCCTCCCTGACTAGAGCCCTGCCTGCTCCATTTCTTGCATTTCTCCATCTAACAGCCCCTGGAGGGTCAGGCATAGGGAGTGGGGTGACATTTGGGTGACTAACATTCACTGTCCTGCTAACCCACCCTACTCCCCCACTGCCACACTCCCGCCTGGTGAGACCTCACACCTTCTAACTTTGTCTTCCTTCTCCTCCCAGCAATTTCTGGCCACAAAGACCGGGGTAGGTATGGGGCTGGTATGAGTGGGGCAGACAATTATTATGAAGTCCTGGGGACCCTCCCTCCCCTTCCCCTTCCTCTTCCCCTTCCCAAGCAGAGGTGGTCTGGGATGGGCTAAGACCCAGGACTATGGGGTGAGAGACCCCTCATCCTGCCACCAG
Seq C2 exon
GGCACCCTCGAGGATCAGATCATCGAGGCTAACCCCGCCATGGAGGCTTTCGGCAATGCCAAGACCCTGCGCAATGACAACTCGTCCCGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003512:ENSBTAT00000039242:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(0.4=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development