MmuINT0103643 @ mm9
Intron Retention
Gene
ENSMUSG00000074652 | Myh7b
Description
myosin, heavy chain 7B, cardiac muscle, beta [Source:MGI Symbol;Acc:MGI:3710243]
Coordinates
chr2:155443260-155443476:+
Coord C1 exon
chr2:155443260-155443283
Coord A exon
chr2:155443284-155443383
Coord C2 exon
chr2:155443384-155443476
Length
100 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGT
5' ss Score
9.65
3' ss Seq
CTCATTCCCGCTGCCACCAGGGC
3' ss Score
7.93
Exon sequences
Seq C1 exon
CAATTTCTGGCGACAAAGACAGGG
Seq A exon
GTAAGTATTGGGCCAGCTGTGGGGTAGACAACACTTATGGGGTCCTGGGGATGTCCCCTTCTCCATGATCTGCTCTGGCCCTCATTCCCGCTGCCACCAG
Seq C2 exon
GGCACCCTTGAGGATCAAATCATCGAGGCTAACCCTGCCATGGAGGCTTTTGGCAACGCCAAGACTCTGAGGAACGACAACTCCTCCCGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000074652-Myh7b:NM_001085378:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(1.0=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(4.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCTGGCGACAAAGACAGGG
R:
AAAACGGGAGGAGTTGTCGTT
Band lengths:
114-214
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: